Browse Element(s) Details


Os.54971.1.S1_at

Description gb:AK107221.1
DB_XREF= gi:32992430
TID=Os.54971.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D03, full insert sequence.
FL= gb:AK107221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3532011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54971.1.S1_at--1140--3611Chr11:20210271..20210295 (25 bp)
CTTGTCTGCACCTTGGTCAGATTTT
LOC_Os11g35320
Os.54971.1.S1_at--185--7111Chr11:20210256..20210280 (25 bp)
GTCAGATTTTGTCAGCGCCAGAGCT
LOC_Os11g35320
Os.54971.1.S1_at--1161--8291Chr11:20210101..20210125 (25 bp)
GGCTTACTGGTCACTGCGTGAGAAT
LOC_Os11g35320
Os.54971.1.S1_at--665--9871Chr11:20210077..20210101 (25 bp)
TACATGAAGGTCCAGGCTCTAGTTT
LOC_Os11g35320
Os.54971.1.S1_at--936--8551Chr11:20210039..20210063 (25 bp)
TGGATAGATATGGTCCAGACTCCAG
LOC_Os11g35320
Os.54971.1.S1_at--180--6471Chr11:20210005..20210029 (25 bp)
GTAGACTATTAGGTGCGGGATTATG
LOC_Os11g35320
Os.54971.1.S1_at--786--1111Chr11:20209978..20210002 (25 bp)
AGTGTTCTGAGTAGGCATTCTTGCT
LOC_Os11g35320
Os.54971.1.S1_at--571--791Chr11:20209952..20209976 (25 bp)
ATGTGGGAATTGTAGCTGTACGACA
LOC_Os11g35320
Os.54971.1.S1_at--184--6551Chr11:20209863..20209887 (25 bp)
GATTCAGTGAGGTACTTTTTCCCTT
LOC_Os11g35320
Os.54971.1.S1_at--1114--6991Chr11:20209852..20209876 (25 bp)
GTACTTTTTCCCTTCAGTTGAATCT
LOC_Os11g35320
Os.54971.1.S1_at--636--431Chr11:20209785..20209809 (25 bp)
ATCTTGTCAAAATATCGAGTCTGGG
LOC_Os11g35320
Target Sequence 
CTTGTCTGCACCTTGGTCAGATTTTGTCAGCGCCAGAGCTTGGAGGAGCCGCCTTCCTTGCCACATGGAACTGCCTGCGT
TGTATCCTTGTCTATGCTCGGAGTGGGAGAGTTCACTTGAACCTGCGCTGGAGCTCTGAGGAGGTGGATCTTGCCATTCG
CTCCCGTTGGGGCTTACTGGTCACTGCGTGAGAATACATGAAGGTCCAGGCTCTAGTTTGGGGCAATTAATCTGGATAGA
TATGGTCCAGACTCCAGATGGATAAGGTAGACTATTAGGTGCGGGATTATGTTAGTGTTCTGAGTAGGCATTCTTGCTAA
TGTGGGAATTGTAGCTGTACGACATGGAAAATGTAGTCCCAAATGTATGGGAATTTTGCATCATTTTCAATAAGTTATGA
ATGAGTGAGATTCAGTGAGGTACTTTTTCCCTTCAGTTGAATCTGTATTACTGCTTTGAGAAGATGTTCTCTAGAAGCAT
AGTGTAATCTTGTCAAAATATCGAGTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis