Browse Element(s) Details


Os.55103.1.S1_x_at

Description gb:AK107496.1
DB_XREF= gi:32992705
TID=Os.55103.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D08, full insert sequence.
FL= gb:AK107496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g687102/11FK506-binding protein 2-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55103.1.S1_x_at--1114--9091Chr11:21629792..21629816 (25 bp)
TGCTCGTTGACGAGTCGGCGAGACC
NONE
Os.55103.1.S1_x_at--1068--7231Chr11:21629820..21629844 (25 bp)
GTCGCCGTCTGCAAAGTCGCGGCTG
NONE
Os.55103.1.S1_x_at--1075--2311Chr11:21629832..21629856 (25 bp)
AAAGTCGCGGCTGTTCCCGGCCAAG
NONE
Os.55103.1.S1_x_at--342--2152Chr11:21630088..21630110 (23 bp)
ACAGCTTCGGCCAAGAAGTCCGGAG
NONE
Os.55103.1.S1_x_at--304--1312Chr11:21630109..21630133 (25 bp)
AGATGTCACGGAGCTTCAGATCGGT
NONE
Os.55103.1.S1_x_at--921--491Chr11:21630128..21630275 (25 bp)
ATCGGTGTGAAGGTGTCTCCGCCAC
NONE
Os.55103.1.S1_x_at--452--8431Chr11:21630346..21630370 (25 bp)
GGCCTGCCTGCCCAATCAGAGAAGG
NONE
Os.55103.1.S1_x_at--79--1331Chr11:21630433..21630457 (25 bp)
AGAGGCGCTTGCTGACTTGGCATCC
NONE
Os.55103.1.S1_x_at--567--3611Chr11:21630448..21630472 (25 bp)
CTTGGCATCCTGATATGTGGGTCTC
NONE
Os.55103.1.S1_x_at--289--4391Chr11:21630487..21630511 (25 bp)
GCCACGTTATATAAAACCAGGCTTA
NONE
Os.55103.1.S1_x_at--1080--7651Chr11:21630584..21630608 (25 bp)
GGGATGATTCTGTAACTTGATGATA
NONE
Target Sequence 
TGCTCGTTGACGAGTCGGCGAGACCGGCGTCGCCGTCTGCAAAGTCGCGGCTGTTCCCGGCCAAGGTCAAGGGGAGGGTG
GGACCCGTTTCTGCGGCGGTGGCGAGCGCGGCTCGTCCGCCTCGCCGCCGTCTTCGTCGCTGCGGCCCTCATCCTGACAG
CTTCGGCCAAGAAGTCCGGAGATGTCACGGAGCTTCAGATCGGTGTGAAGGTGTCTCCGCCACCACATCGCCGCCGCCGC
ATCCCCGGCCGGCCGTCGGACCTCCTCACCCCAGCGACCTCCTGCCCACCGTCGGCCTGCCTGCCCAATCAGAGAAGGGC
GAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGGAGGAAAGGAGAGGAAGGGAGAGCCGGAGAGGCGCTTGCTGACTTGG
CATCCTGATATGTGGGTCTCACGCTGATTTAGCCGCCACGTTATATAAAACCAGGCTTAAAACCGCCGAGGGACCTAGTT
TGCACTGGTTTTATAAGTTGGAGGATGTGTTGTATCCGGTTTTGTGGTTGGGGGATGATTCTGTAACTTGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis