Browse Element(s) Details


Os.55139.1.S1_at

Description gb:AK107562.1
DB_XREF= gi:32992771
TID=Os.55139.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B12, full insert sequence.
FL= gb:AK107562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0438011/11phosphate translocator, putative, expressed
LOC_Os12g041703/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55139.1.S1_at--583--9332Chr12:1751811..1751835 (25 bp)
TCGCCTTCTCCTGGACAGTGATCAA
LOC_Os12g04170
Os.55139.1.S1_at--678--9732Chr12:1751832..1751856 (25 bp)
TCAAGGACACCGTCACGCCGGTCAA
LOC_Os12g04170
Os.55139.1.S1_at--1103--7212Chr12:1752043..1752067 (25 bp)
GTCGAACACCAAGCATAGTACATTA
LOC_Os12g04170
Os.55139.1.S1_at--246--2571Chr11:1819213..1819237 (25 bp)
AACGGCATTCCTTTGTCATCTTTAG
LOC_Os11g04380
Os.55139.1.S1_at--627--10091Chr11:1819235..1819259 (25 bp)
TAGGATGCCTGAACTGTGGTTTAAT
LOC_Os11g04380
Os.55139.1.S1_at--402--7511Chr11:1819250..1819274 (25 bp)
GTGGTTTAATTGACCCTTGATGAAC
LOC_Os11g04380
Os.55139.1.S1_at--760--671Chr11:1819269..1819293 (25 bp)
ATGAACTTCAAGCTGCATATTTAAG
LOC_Os11g04380
Os.55139.1.S1_at--611--2832Chr11:1819291..1819315 (25 bp)
AAGTTTGTGACCATTCATTATCATG
LOC_Os11g04380
Os.55139.1.S1_at--98--6571Chr11:1819366..1819390 (25 bp)
GATTCAGCAGGAGATAGCAACACAG
LOC_Os11g04380
Os.55139.1.S1_at--805--6531Chr11:1819395..1819419 (25 bp)
GATTTATCCAATCCCTTTTCGTCAA
LOC_Os11g04380
Os.55139.1.S1_at--994--5531Chr11:1819465..1819489 (25 bp)
GAAACTTCTTAATCCATTGGCTACT
LOC_Os11g04380
Target Sequence 
TCGCCTTCTCCTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTTCCTCGGCGTC
GCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGAGAGGAGGGCCGCGTCAATGGCGACGGCGAA
GGACGGCGACGCAGAAGCCGGTGCGCGGCTGCTGCCGGAGAAAGATGCCGGTGAGCAGAAGAACTGATCAAAGTCGAACA
CCAAGCATAGTACATTAATGAAGGTTGATAAATCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTTTAA
TTGACCCTTGATGAACTTCAAGCTGCATATTTAAGTTTGTGACCATTCATTATCATGGAGAATACAGATCATTTTAGATA
TGCATTTGATTGAGGAACAATGCATGTGATTCAGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTTTTCGTCA
AAAGGGGCAAGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAACTTCTTAATCCATTGGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis