Browse Element(s) Details


Os.55330.1.S1_at

Description gb:AK107883.1
DB_XREF= gi:32993092
TID=Os.55330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D09, full insert sequence.
FL= gb:AK107883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1398011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13960OsAffx.30226.2.S1_s_at5/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.442.1.S1_x_at3/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.24587.1.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.2.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.5.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.19052.1.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13970OsAffx.7105.1.S1_x_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.7105.1.S1_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.28276.1.S1_x_at2/1111+7741441..7742877Transferase family protein
LOC_Os11g13980Os.55330.1.S1_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13980Os.55330.1.S1_x_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13990OsAffx.30967.1.S1_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g13990Os.51398.1.S1_x_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55330.1.S1_at--559--4191Chr11:7746387..7746411 (25 bp)
CCCGTTCCGGGTTCTGGAGCAGTCG
LOC_Os11g13980
Os.55330.1.S1_at--373--3951Chr11:7746385..7746409 (25 bp)
CGTTCCGGGTTCTGGAGCAGTCGCC
LOC_Os11g13980
Os.55330.1.S1_at--753--3911Chr11:7746299..7746323 (25 bp)
CTGGCGAGGTGCGACTGGAAGGAGA
LOC_Os11g13980
Os.55330.1.S1_at--407--1811Chr11:7746275..7746299 (25 bp)
ACGCCGGAGGCGCACGTGGTGACGG
LOC_Os11g13980
Os.55330.1.S1_at--1055--7731Chr11:7745919..7745943 (25 bp)
GGTGGTGAAGGCGTCCAAGGCCGAG
LOC_Os11g13980
Os.55330.1.S1_at--857--7271Chr11:7745907..7745931 (25 bp)
GTCCAAGGCCGAGATGTGAGCATGT
LOC_Os11g13980
Os.55330.1.S1_at--960--4371Chr11:7745905..7745929 (25 bp)
CCAAGGCCGAGATGTGAGCATGTCA
LOC_Os11g13980
Os.55330.1.S1_at--480--2951Chr11:7745903..7745927 (25 bp)
AAGGCCGAGATGTGAGCATGTCAGT
LOC_Os11g13980
Os.55330.1.S1_at--268--1531Chr11:7745889..7745913 (25 bp)
AGCATGTCAGTGAATAGTGATCGGC
LOC_Os11g13980
Os.55330.1.S1_at--534--7351Chr11:7745880..7745904 (25 bp)
GTGAATAGTGATCGGCGACACCTAT
LOC_Os11g13980
Os.55330.1.S1_at--33--3931Chr11:7745868..7745892 (25 bp)
CGGCGACACCTATGTGTAATACTAT
LOC_Os11g13980
Target Sequence 
CCCGTTCCGGGTTCTGGAGCAGTCGCCGCTGAGGCCGGCGGGAGGTGTCGCCGCCGCCGCCGCCGCCGGCGAGCCGGCGG
CCGTGGCGCTGGCGAGGTGCGACTGGAAGGAGACGCCGGAGGCGCACGTGGTGACGGTGGACGTGCTCGGGGTGCGGCGC
GGCGACGTGCGCGTGGAGGTGGACGAGGCCAGCCGCGTGCTCCGGGTGTCCGGCGAGCGGCGTCGCGCCGGCGCCGCCGA
GGAGGAGGAGGGGGAGCGCGACGGCGTGCGGTGGCACCGCGCCGAGCGCGCGGCGGGGAGGTTCTGGAGGCGGTTCAGGA
TGCCGCCCGGCGCCGACGTGGGGCGCGTCGCGGCGAGGCTCGACGACGGCGTGCTCACCGTCACCGTGCCCAAGGTGCCC
GGCCACCGCGGGCGGGAGCCGCGCGTCGTCGCCATCGACGGCGCCGGCGCCGGCGACATGGAGGCGGAGGTGGTGAAGGC
GTCCAAGGCCGAGATGTGAGCATGTCAGTGAATAGTGATCGGCGACACCTATGTGTAATACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis