Browse Element(s) Details


Os.5558.1.S1_at

Description gb:AK122182.1
DB_XREF= gi:37991828
TID=Os.5558.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein phosphatase (B1051E10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149M05, full insert sequence.
FL= gb:AK122182.1 gb:AK100195.1 gb:AK105047.1 gb:AK064941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2475011/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein
LOC_Os01g24780Os.34927.1.S1_at11/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24780Os.20572.1.A1_at1/111+13923812..13927086Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5558.1.S1_at--758--7711Chr01:13905338..13905362 (25 bp)
GGGTGATCTCTTTTATGTCTCGGAT
LOC_Os01g24750
Os.5558.1.S1_at--104--9451Chr01:13905319..13905343 (25 bp)
TCGGATCCACCAGGGCATGGCATTA
LOC_Os01g24750
Os.5558.1.S1_at--979--1691Chr01:13905285..13905309 (25 bp)
AGCCAATATCATTTCCTCCTTGAGT
LOC_Os01g24750
Os.5558.1.S1_at--607--4771Chr01:13905248..13905272 (25 bp)
GCTGCTCGCTGGATATGTGTTGACT
LOC_Os01g24750
Os.5558.1.S1_at--930--9211Chr01:13905224..13905248 (25 bp)
TCCACAGGCGGTACTGCATTGTTGT
LOC_Os01g24750
Os.5558.1.S1_at--930--1151Chr01:13905191..13905215 (25 bp)
AGTCTATCTGACTCAGCAGCTCATT
LOC_Os01g24750
Os.5558.1.S1_at--55--1591Chr01:13905174..13905198 (25 bp)
AGCTCATTCATTCTGATCCTCTTTT
LOC_Os01g24750
Os.5558.1.S1_at--412--10431Chr01:13905143..13905167 (25 bp)
TTATCTTGCCGCTGCAATGTTTGGC
LOC_Os01g24750
Os.5558.1.S1_at--529--6331Chr01:13905097..13905121 (25 bp)
GATGCAGTAGTTCCTCTTTTTGTTA
LOC_Os01g24750
Os.5558.1.S1_at--222--8671Chr01:13904979..13905003 (25 bp)
TGTGTAACCCGTTTTCTGTTTCACT
LOC_Os01g24750
Os.5558.1.S1_at--279--3871Chr01:13904964..13904988 (25 bp)
CTGTTTCACTCCGACGAGCAATTGA
LOC_Os01g24750
Target Sequence 
GGGTGATCTCTTTTATGTCTCGGATCCACCAGGGCATGGCATTAGNCTTCTCCAGCCAATATCATTTCCTCCTTGAGTGG
CATGCTCTCCGCTGCTCGCTGGATATGTGTTGACTCCACAGGCGGTACTGCATTGTTGTACAGCAGCAGTCTATCTGACT
CAGCAGCTCATTCATTCTGATCCTCTTTTTTTTNGTTTATCTTGCCGCTGCAATGTTTGGCGGCACAATGTGTTTTGTCG
TGGATGCAGTAGTTCCTCTTTTTGTTAGTTTCTTAGTGTGGTTTCTTTGCCTGGTTGCTGTGAGCTGTGTTTGCTTATGT
ATCATCTTAATTAGATCATGAGATATATGCTTGGTGGAATTGTGTAACCCGTTTTCTGTTTCACTCCGACGAGCAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis