Browse Element(s) Details


Os.55693.1.S1_at

Description gb:AK108574.1
DB_XREF= gi:32993783
TID=Os.55693.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F09, full insert sequence.
FL= gb:AK108574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g334001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33450NANA7+19987442..19994662retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55693.1.S1_at--600--5651Chr07:19986968..19986992 (25 bp)
GACAGGTAGTTCCCTTGGACAAGGA
NONE
Os.55693.1.S1_at--622--8851Chr07:19986899..19986923 (25 bp)
TGATGCATTTTAGTGGATGACCCCA
NONE
Os.55693.1.S1_at--529--10371Chr07:19986892..19986916 (25 bp)
TTTTAGTGGATGACCCCAGACAGGT
NONE
Os.55693.1.S1_at--1000--8951Chr07:19986732..19986756 (25 bp)
TGACAATGATGTTCAGCCGTACATC
NONE
Os.55693.1.S1_at--1029--8851Chr07:19986726..19986750 (25 bp)
TGATGTTCAGCCGTACATCATGGCA
NONE
Os.55693.1.S1_at--1083--9871Chr07:19986713..19986737 (25 bp)
TACATCATGGCATGACCTCCTTCTT
NONE
Os.55693.1.S1_at--921--1471Chr07:19986601..19986625 (25 bp)
AGAATCTATGAACCACACTGCCTTG
NONE
Os.55693.1.S1_at--425--3311Chr07:19986588..19986612 (25 bp)
CACACTGCCTTGCTCGTGATTAAAT
NONE
Os.55693.1.S1_at--195--5412Chr07:19965518..19965542 (25 bp)
GAAGCTGTATCAAACTGAAGAATCT
LOC_Os07g33400
Os.55693.1.S1_at--780--5371Chr07:19986426..19986450 (25 bp)
GAAGAATCTAGTCAAGTTGCATGAT
NONE
Os.55693.1.S1_at--119--3071Chr07:19986422..19986446 (25 bp)
AATCTAGTCAAGTTGCATGATGTTC
NONE
Target Sequence 
GACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTT
AGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATG
ATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGAC
AATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCC
ATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGAT
TAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTC
ATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG
CATGATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis