Browse Element(s) Details


Os.55820.1.S1_at

Description gb:AK108847.1
DB_XREF= gi:32994056
TID=Os.55820.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A03, full insert sequence.
FL= gb:AK108847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g165109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16470NANA12+9432404..9432751hypothetical protein
LOC_Os12g16480OsAffx.7611.1.S1_at10/1112+9433343..9435606hypothetical protein
LOC_Os12g16490OsAffx.30515.2.S1_x_at10/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.1.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.4.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein
LOC_Os12g16520Os.54238.1.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16520OsAffx.18050.2.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16530OsAffx.19704.1.S1_at11/1112+9471444..9471847hypothetical protein
LOC_Os12g16540Os.52308.1.S1_at11/1112+9473783..9476226wall-associated kinase-like 1, putative, expressed
LOC_Os12g16550OsAffx.7613.1.S1_at11/1112+9477854..9478101hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55820.1.S1_at--34--2712Chr12:9488288..9488312 (25 bp)
AAGCTTGCTCATCGTACGTATCATC
NONE
Os.55820.1.S1_at--580--3532Chr12:9488297..9488321 (25 bp)
CATCGTACGTATCATCCATCCATGG
NONE
Os.55820.1.S1_at--992--4011Chr12:9451421..9451445 (25 bp)
CGTCGTGTCGACATTTCTGTAGCTA
LOC_Os12g16510
Os.55820.1.S1_at--671--9471Chr12:9451436..9451460 (25 bp)
TCTGTAGCTAGCCTTTGATTGCAAA
LOC_Os12g16510
Os.55820.1.S1_at--922--2691Chr12:9451459..9451483 (25 bp)
AAGCTCTGTAGGTCTGAGGTCTCGT
LOC_Os12g16510
Os.55820.1.S1_at--634--9511Chr12:9451478..9451502 (25 bp)
TCTCGTGAGGCTGTGTGGTAGTATA
LOC_Os12g16510
Os.55820.1.S1_at--224--9831Chr12:9451507..9451531 (25 bp)
TAAAACTTGCATGTACTCTTCCCTT
LOC_Os12g16510
Os.55820.1.S1_at--50--10371Chr12:9451531..9451555 (25 bp)
TTTTTATCGAAGAGACCGCGGGTCA
LOC_Os12g16510
Os.55820.1.S1_at--476--5811Chr12:9451544..9451568 (25 bp)
GACCGCGGGTCAATTTGCTGGGATT
LOC_Os12g16510
Os.55820.1.S1_at--286--6532Chr12:9488612..9488636 (25 bp)
GATTTGTTGGCCTCTTTTCTGAACA
NONE
Os.55820.1.S1_at--13--8811Chr12:9451671..9451695 (25 bp)
TGTTCCTGTACTGAATATTCTTTCC
LOC_Os12g16510
Target Sequence 
AAGCTTGCTCATCGTACGTATCATCCATCCATGGCGATGCCGTGGGAGCTCGCCGAGTACCTGATGGCCGTCACCTGGGT
GGCGCTCGGCCGGTGGGTGGCGGCGTGTGTCTCCCTCGCCGACGGGATCGCCTGCTCGCTGCGCTGCCGCCGCCGCCGCC
GCCGCCCCTCGCCGGCCTCATCCACTGTCGTCGTGTCGACATTTCTGTAGCTAGCCTTTGATTGCAAAGCTCTGTAGGTC
TGAGGTCTCGTGAGGCTGTGTGGTAGTATATATGTAAAACTTGCATGTACTCTTCCCTTTTTTATCGAAGAGACCGCGGG
TCAATTTGCTGGGATTTGTTGGCCTCTTTTCTGAACATTTACTATTGAGTTCGTTTCTTTTTTTTTTCTTTTTTTTTGGG
AGAGGGGGAGGGAGGGGGTTGGTAATGACATGTGAGTTTGTTCCTGTACTGAATATTCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis