Browse Element(s) Details


Os.56220.1.S1_at

Description gb:AK109632.1
DB_XREF= gi:32994841
TID=Os.56220.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D05, full insert sequence.
FL= gb:AK109632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2551011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein
LOC_Os11g25480OsAffx.19006.1.S1_at11/1111+14019116..14019521hypothetical protein
LOC_Os11g25490OsAffx.31129.1.S1_at11/1111+14021140..14022240hypothetical protein
LOC_Os11g25490OsAffx.10110.3.S1_s_at1/1111+14021140..14022240hypothetical protein
LOC_Os11g25500Os.24032.2.S1_at10/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25500Os.7207.1.S1_at4/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25530OsAffx.31528.1.S1_x_at11/1111+14051002..14052284hypothetical protein
LOC_Os11g25530OsAffx.31528.1.S1_at9/1111+14051002..14052284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56220.1.S1_at--918--1931Chr11:14026422..14026446 (25 bp)
ACGGCATGTTGCTGTTCGAGATCCT
LOC_Os11g25510
Os.56220.1.S1_at--738--6711Chr11:14026435..14026459 (25 bp)
GTTCGAGATCCTGGGCTACATGCAT
LOC_Os11g25510
Os.56220.1.S1_at--754--1691Chr11:14026469..14026493 (25 bp)
AGCCAGGAGCAGTGGTATCCCCGGT
LOC_Os11g25510
Os.56220.1.S1_at--1124--6171Chr11:14026628..14026652 (25 bp)
GAGGACCGACCGTCCATGGCCAGCG
LOC_Os11g25510
Os.56220.1.S1_at--970--871Chr11:14026643..14026667 (25 bp)
ATGGCCAGCGTGGTTCAGATGCTAG
LOC_Os11g25510
Os.56220.1.S1_at--99--9651Chr11:14026657..14026681 (25 bp)
TCAGATGCTAGAGGCCCATGACCAC
LOC_Os11g25510
Os.56220.1.S1_at--720--9251Chr11:14026751..14026775 (25 bp)
TCCTCGCTGTTACACACGGATGACA
LOC_Os11g25510
Os.56220.1.S1_at--179--1931Chr11:14026766..14026790 (25 bp)
ACGGATGACACCACTGGAGGCACCA
LOC_Os11g25510
Os.56220.1.S1_at--745--9691Chr11:14026798..14026822 (25 bp)
TCACATCTCACATCACATCACTTAA
LOC_Os11g25510
Os.56220.1.S1_at--49--2091Chr11:14026812..14026836 (25 bp)
ACATCACTTAATTACTTCTTCCAAA
LOC_Os11g25510
Os.56220.1.S1_at--63--3512Chr11:14026890..14026914 (25 bp)
CATGCACAACTTTAATTATTCGTCT
LOC_Os11g25510
Target Sequence 
ACGGCATGTTGCTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGGTGGGTGTGG
CAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGACAAGGC
GGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGA
TGCTAGAGGCCCATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACT
TCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACCTCCACTCACATCTCACATCACATCACTTA
ATTACTTCTTCCAAAAATTCTTTGCTAACTACTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTT
AATTATTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis