Browse Element(s) Details


Os.56256.1.S1_at

Description gb:AK109700.1
DB_XREF= gi:32994909
TID=Os.56256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F05, full insert sequence.
FL= gb:AK109700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3934011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39310Os.4683.1.S1_at10/115+22975629..22978472Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39320Os.4683.3.S1_at11/115+22982341..22985148Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39330NANA5+22985889..22991180retrotransposon protein, putative, unclassified
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56256.1.S1_at--68--5791Chr05:22996746..22996770 (25 bp)
GACGCCAAGCTTTAGGCAAACCGTT
LOC_Os05g39340
Os.56256.1.S1_at--492--5131Chr05:22996761..22996785 (25 bp)
GCAAACCGTTTTAAGCTGGCTGACC
LOC_Os05g39340
Os.56256.1.S1_at--927--7891Chr05:22996790..22996814 (25 bp)
GGTTCTTTCGTCTTGGCTTGCATCC
LOC_Os05g39340
Os.56256.1.S1_at--996--3811Chr05:22996827..22996851 (25 bp)
CTCCACCTAATGTAATCTCTCTTGT
LOC_Os05g39340
Os.56256.1.S1_at--20--10392Chr05:22996875..22996899 (25 bp)
TTTTCTTTCGCTCTGTTATGCTTCC
LOC_Os05g39340
Os.56256.1.S1_at--976--3633Chr05:22996895..22996919 (25 bp)
CTTCCTCTTTTCTTCTTGTATGGTT
LOC_Os05g39340
Os.56256.1.S1_at--511--871Chr05:22997143..22997167 (25 bp)
ATGGCCCATTCATTTGGTTGCCTGG
LOC_Os05g39340
Os.56256.1.S1_at--496--7911Chr05:22997158..22997182 (25 bp)
GGTTGCCTGGGATGATCATGCCCCA
LOC_Os05g39340
Os.56256.1.S1_at--474--591Chr05:22997175..22997199 (25 bp)
ATGCCCCACCGGAGCTGGATGATGG
LOC_Os05g39340
Os.56256.1.S1_at--1019--6251Chr05:22997195..22997219 (25 bp)
GATGGGTCTATAGTCTCCAAATCGA
LOC_Os05g39340
Os.56256.1.S1_at--876--5951Chr05:22997224..22997248 (25 bp)
GAGCAAGTGCTTTTGTGGCTTCACC
LOC_Os05g39340
Target Sequence 
GACGCCAAGCTTTAGGCAAACCGTTTTAAGCTGGCTGACCGGGCGGTTCTTTCGTCTTGGCTTGCATCCTTCTCCTCTCC
TCTCCACCTAATGTAATCTCTCTTGTTTGTTTTCTCTCTCTCTTTCTTCTTTTCTTTCGCTCTGTTATGCTTCCTCTTTT
CTTCTTGTATGGTTTGTACAGTTTTGATGTTTCTTTAATTTTAATTCAGGTGGGGAGTTCCCTCCCCCCCGGCATTAAAA
AAAAAGATGCTTTTGCTAGGAATTTCGTACGTTAAGTTTATTGAGTCGGTTTGGAATTCCGCATGTACATGCGCGCCCCA
TCGTGTACACAAGTGAACAAGCGAGGGACATCGGATTTCTGTGGGCTGGCTAGGCCTCCTGCATGCTTGCTGCCCCCATG
GCCCATTCATTTGGTTGCCTGGGATGATCATGCCCCACCGGAGCTGGATGATGGGTCTATAGTCTCCAAATCGAGTAAGA
GCAAGTGCTTTTGTGGCTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis