Browse Element(s) Details


Os.56266.1.S1_at

Description gb:AK109716.1
DB_XREF= gi:32994925
TID=Os.56266.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H10, full insert sequence.
FL= gb:AK109716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5440011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56266.1.S1_at--341--4511Chr04:32150438..32150462 (25 bp)
GCCCGGAACAACGTGCGGTCGTCGT
LOC_Os04g54400
Os.56266.1.S1_at--1039--4051Chr04:32150472..32150496 (25 bp)
CGATGAGCGTGGACGACATCAGGCA
LOC_Os04g54400
Os.56266.1.S1_at--116--3531Chr04:32150530..32150554 (25 bp)
CATGAGGGAGGAGATCCACCGGATC
LOC_Os04g54400
Os.56266.1.S1_at--436--1271Chr04:32150541..32150565 (25 bp)
AGATCCACCGGATCGGGAAGCCCAA
LOC_Os04g54400
Os.56266.1.S1_at--1007--2871Chr04:32150564..32150588 (25 bp)
AAGGGCGCGCTGAGTAGGCTGTTCC
LOC_Os04g54400
Os.56266.1.S1_at--480--3951Chr04:32150675..32150699 (25 bp)
CGGAAGTCGATGTCCTTGGAGTGTT
LOC_Os04g54400
Os.56266.1.S1_at--561--1111Chr04:32150694..32150718 (25 bp)
AGTGTTAAGGTCTACGTGTGCGTTT
LOC_Os04g54400
Os.56266.1.S1_at--483--9931Chr04:32150706..32150730 (25 bp)
TACGTGTGCGTTTCAGTTCGGTGTG
LOC_Os04g54400
Os.56266.1.S1_at--998--3971Chr04:32150724..32150748 (25 bp)
CGGTGTGTTTGTGTTACTGTTAGTT
LOC_Os04g54400
Os.56266.1.S1_at--735--3131Chr04:32150755..32150779 (25 bp)
AATTATCATTTGTTCGAACTCTAGA
LOC_Os04g54400
Os.56266.1.S1_at--1156--3491Chr04:32150823..32150847 (25 bp)
CATGGAGTATATCTATTGTCAAAAT
LOC_Os04g54400
Target Sequence 
GCCCGGAACAACGTGCGGTCGTCGTCGTCGGCGACGATGAGCGTGGACGACATCAGGCAGCGGGTGGTGGAGCTCGAGGA
GGAGTGCTCGAGCATGAGGGAGGAGATCCACCGGATCGGGAAGCCCAAGGGCGCGCTGAGTAGGCTGTTCCGGAAGCTCG
GGCTCGGCGGGAGGTCGGCGGCGAGGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGACGAGCTCCGGCGACGAGAGGCGG
AAGTCGATGTCCTTGGAGTGTTAAGGTCTACGTGTGCGTTTCAGTTCGGTGTGTTTGTGTTACTGTTAGTTTGGTTAAAT
TATCATTTGTTCGAACTCTAGAATAGATTTTTCCCCCTTTTGGAACAGGAAGTTATTAGAACGTACATGGAGTATATCTA
TTGTCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis