Browse Element(s) Details


Os.56358.1.S1_at

Description gb:AK109918.1
DB_XREF= gi:32995127
TID=Os.56358.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E01, full insert sequence.
FL= gb:AK109918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g166804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16650Os.52760.1.S1_at11/1112+9529283..9538202cyclopropane fatty acid synthase, putative, expressed
LOC_Os12g16660NANA12+9540791..9541038hypothetical protein
LOC_Os12g16670Os.52225.1.S1_at11/1112+9544312..9545898expressed protein
LOC_Os12g16680OsAffx.7615.1.S1_at9/1112+9553050..9555372expressed protein
LOC_Os12g16680Os.56358.1.S1_at4/1112+9553050..9555372expressed protein
LOC_Os12g16690Os.49355.1.S1_at11/1112+9563341..9568395Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g16710OsAffx.442.1.S1_x_at3/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.442.1.S1_at2/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.2.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.54883.1.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.30226.4.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710Os.25330.2.S1_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16710OsAffx.24587.1.S1_x_at1/1112+9569197..9576126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16720Os.25621.2.S1_at11/1112+9577182..9579181Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56358.1.S1_at--371--1871Chr06:18912930..18912954 (25 bp)
ACGAGATGCCATTGTCAGGACACTT
NONE
Os.56358.1.S1_at--735--10131Chr06:18912734..18912758 (25 bp)
TATGCAGCCCATTTAATTTCTAAGA
NONE
Os.56358.1.S1_at--228--9932Chr12:9554282..9554306 (25 bp)
TACTGTTTGTTGTTTGCCATGGAGG
LOC_Os12g16680
Os.56358.1.S1_at--26--5511Chr06:18912641..18912665 (25 bp)
GAACACATGTATACTCCATTCCAAA
NONE
Os.56358.1.S1_at--666--10412Chr12:9554353..9554377 (25 bp)
TTATAACTTCACTAGGCCATGCAAA
LOC_Os12g16680
Os.56358.1.S1_at--963--8192Chr12:9554410..9554434 (25 bp)
GGAAGTTGCTTCTATCTATACTATA
LOC_Os12g16680
Os.56358.1.S1_at--907--2411Chr06:18912532..18912556 (25 bp)
AAAACCCTTGTAGCTGATTCGGTGT
NONE
Os.56358.1.S1_at--1078--9351Chr06:18912492..18912516 (25 bp)
TCGAAGGTACTCTTGGCAGCCACCG
NONE
Os.56358.1.S1_at--918--8251Chr06:18912478..18912502 (25 bp)
GGCAGCCACCGTGTATTGATCTGAT
NONE
Os.56358.1.S1_at--579--6391Chr06:18912456..18912480 (25 bp)
GATCGTCTTGATCACAGACACTGAA
NONE
Os.56358.1.S1_at--716--9932Chr12:9554555..9554579 (25 bp)
TAGCGGTGACTTTTTTCGGTGGATT
LOC_Os12g16680
Target Sequence 
ACGAGATGCCATTGTCAGGACACTTATTTAAGCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCG
GCAGGGGAAGAAGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTGTTTGTTGTT
TGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATTCCAAACTTATAACTTCACTAGGCCATGCA
AACTTGGATAAAATAAGTTAAGTATTGGATGGATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTC
GGTGTGGGTTGTTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCACAGACACTGA
AACTTTATAGCGGTGACTTTTTTCGGTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis