Browse Element(s) Details


Os.5681.1.S1_at

Description gb:AK073815.1
DB_XREF= gi:32983838
TID=Os.5681.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065D05, full insert sequence.
FL= gb:AK073815.1 gb:AK062110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2963011/11NOL1/NOP2/sun family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed
LOC_Os09g29670Os.39617.1.S1_at2/119+18043670..18049945ABC-2 type transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5681.1.S1_at--836--5931Chr09:18019118..18019142 (25 bp)
GAGCAGCCTGATCTCAGCACTGAGG
LOC_Os09g29630
Os.5681.1.S1_at--430--6651Chr09:18019145..18019169 (25 bp)
GTTGATCCAGAAGCTGTGCCCGAAA
LOC_Os09g29630
Os.5681.1.S1_at--1095--611Chr09:18019226..18019250 (25 bp)
ATGCTGATGCTATCCAAGGCCACAT
LOC_Os09g29630
Os.5681.1.S1_at--146--311Chr09:18019254..18019278 (25 bp)
ATAGCTGGATACAACATCGCCCCAT
LOC_Os09g29630
Os.5681.1.S1_at--593--4311Chr09:18019275..18019299 (25 bp)
CCATCATTTGCCTACCGGTATTAGT
LOC_Os09g29630
Os.5681.1.S1_at--954--5871Chr09:18019308..18019332 (25 bp)
GAGCCGCCATTTTTCATTGATTCTG
LOC_Os09g29630
Os.5681.1.S1_at--871--9951Chr09:18019338..18019362 (25 bp)
TACGCCGTTTTCCTGTTTGATTTAT
LOC_Os09g29630
Os.5681.1.S1_at--156--7691Chr09:18019384..18019408 (25 bp)
GGGTGAATGAACTCGCCCATTAGTG
LOC_Os09g29630
Os.5681.1.S1_at--852--5571Chr09:18019408..18019432 (25 bp)
GAAAGGGCACCACGTTGCTCTAAAG
LOC_Os09g29630
Os.5681.1.S1_at--246--7131Chr09:18019446..18019470 (25 bp)
GTCATCTGGTAATCGTGCACGTATT
LOC_Os09g29630
Os.5681.1.S1_at--1091--7131Chr09:18019557..18019581 (25 bp)
GTCTTAACCTGAACTCTTGAACCTG
LOC_Os09g29630
Target Sequence 
GAGCAGCCTGATCTCAGCACTGAGGCAGTTGATCCAGAAGCTGTGCCCGAAAGCAAAGCATCTGACATGGAGATTGCAGA
TGCTAAAGAGGTGGAGTAATCCTGCTGAATGCTGATGCTATCCAAGGCCACATATTATAGCTGGATACAACATCGCCCCA
TCATTTGCCTACCGGTATTAGTTGAGCGATGAGCCGCCATTTTTCATTGATTCTGGCATTTACGCCGTTTTCCTGTTTGA
TTTATCATATTCTGTTTCTGAAGAATGGGTGAATGAACTCGCCCATTAGTGAAAGGGCACCACGTTGCTCTAAAGCCCAT
CTGTCCATGTCATCTGGTAATCGTGCACGTATTGCCCCCTCCATACTTCCGGCTGGCTCATCCACCTGTAACCTATCAGT
ATCAGCTTATTTTTCTTCGAAGAGAATGTATTACAGGGAGTCTTAACCTGAACTCTTGAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis