Browse Element(s) Details


Os.56976.1.S1_at

Description gb:AK110663.1
DB_XREF= gi:32995872
TID=Os.56976.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F05, full insert sequence.
FL= gb:AK110663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3832011/11expressed protein
LOC_Os08g442401/11peroxisome biogenesis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56976.1.S1_at--846--4251Chr12:23486827..23486851 (25 bp)
CCGGTGGGCGTCGTGCATTAATGCA
LOC_Os12g38320
Os.56976.1.S1_at--190--4951Chr12:23486805..23486829 (25 bp)
GCATTGATGCATTTCGGCTGCTTTT
LOC_Os12g38320
Os.56976.1.S1_at--388--8331Chr12:23486790..23486814 (25 bp)
GGCTGCTTTTGTGACGAACTGTGAA
LOC_Os12g38320
Os.56976.1.S1_at--856--5111Chr12:23486670..23486694 (25 bp)
GCAAATTCCTTTGATTATGCCTTGT
LOC_Os12g38320
Os.56976.1.S1_at--620--591Chr12:23486654..23486678 (25 bp)
ATGCCTTGTCAATTGCTGCATTGGC
LOC_Os12g38320
Os.56976.1.S1_at--940--4931Chr12:23486637..23486661 (25 bp)
GCATTGGCATGAGCAGATGTCAAGT
LOC_Os12g38320
Os.56976.1.S1_at--565--2571Chr12:23486561..23486585 (25 bp)
AACTGGAAACTGATCTTTGCATTTT
LOC_Os12g38320
Os.56976.1.S1_at--670--3531Chr12:23486503..23486527 (25 bp)
CATGCTGTGATGACTTGTGTATTTG
LOC_Os12g38320
Os.56976.1.S1_at--147--8771Chr12:23486475..23486499 (25 bp)
TGTATAATTTTGTCAGAGCTCTGTT
LOC_Os12g38320
Os.56976.1.S1_at--430--10751Chr12:23486449..23486473 (25 bp)
TTGAATCTGATTTACTCCCTCTGGA
LOC_Os12g38320
Os.56976.1.S1_at--515--98924Chr09:21644438..21644509 (25 bp)
TACTCCCTCTGGACGGAGGTAGTAT
NONE
Target Sequence 
CCGGTGGGCGTCGTGCATTAATGCATTGATGCATTTCGGCTGCTTTTGTGACGAACTGTGAATAGAGCTTTTATTTTTCT
TTTTCTTTTTCTTTTGGTGTGTAATAATTAATTAATTGATTGATTTCTTGATGTGAGTTTTTTGGTTGAGATGTTGAGCA
AATTCCTTTGATTATGCCTTGTCAATTGCTGCATTGGCATGAGCAGATGTCAAGTAATTATACTAGCTTGTAATAAGCTG
ATAAATTTAGAAGTTTTCAGGTAGAAAACTGGAAACTGATCTTTGCATTTTTTTTTAAATTTTGACTCCTTTTTGTTTAG
TTTTCATGCTGTGATGACTTGTGTATTTGAGCTGTATAATTTTGTCAGAGCTCTGTTCTTGAATCTGATTTACTCCCTCT
GGACGGAGGTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis