Browse Element(s) Details


Os.5703.1.S1_at

Description gb:AK062913.1
DB_XREF= gi:32972931
TID=Os.5703.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G11, full insert sequence.
FL= gb:AK062913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0342010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5703.1.S1_at--523--3371NONE
CACCTCCCGGTCAAGTGATAACAAC
NONE
Os.5703.1.S1_at--705--3551Chr03:1442122..1442146 (25 bp)
CATCTCTTGTGCTGCTGAACTGACA
LOC_Os03g03420
Os.5703.1.S1_at--851--1531Chr03:1442098..1442122 (25 bp)
AGCATGCATGTCATACTACCTGTAT
LOC_Os03g03420
Os.5703.1.S1_at--501--791Chr03:1442071..1442095 (25 bp)
ATGTGTGTGTGCTTGTTCAGGCATA
LOC_Os03g03420
Os.5703.1.S1_at--588--9631Chr03:1442055..1442079 (25 bp)
TCAGGCATATGCTTACTAGTAGTGT
LOC_Os03g03420
Os.5703.1.S1_at--648--1131Chr03:1441960..1441984 (25 bp)
AGTGCGGCACCTTTGATACGGAACT
LOC_Os03g03420
Os.5703.1.S1_at--642--9911Chr03:1441944..1441968 (25 bp)
TACGGAACTAGCACTATTGCAGTCT
LOC_Os03g03420
Os.5703.1.S1_at--392--71Chr03:1441929..1441953 (25 bp)
ATTGCAGTCTTTTATGCCGACACTA
LOC_Os03g03420
Os.5703.1.S1_at--768--4511Chr03:1441914..1441938 (25 bp)
GCCGACACTAGCACAACTTGATGAA
LOC_Os03g03420
Os.5703.1.S1_at--162--3431Chr03:1441887..1441911 (25 bp)
CATTTTTCCCTACATAATTGCCTCA
LOC_Os03g03420
Os.5703.1.S1_at--347--2091Chr03:1441876..1441900 (25 bp)
ACATAATTGCCTCAGCGTCAGCTTT
LOC_Os03g03420
Target Sequence 
CACCTCCCGGTCAAGTGATAACAACAGACCCCAAGAACATCCTGTTGAGGCATTTTTATCAAAAATCCGAGGAAAAGTTG
AGGCCAAAGAGAGCTGCACCAGACAACCTGACCCCACAGAACAACGGCAAACAACCAAGAGGCCCTCTCTCTGATGGTGG
TGGTAGCCAGGCAACTGCAAGTGGTAGAAGCTAAAACNCAGCTGTTGTTCTCTCCGGCATCTCTTGTGCTGCTGAACTGA
CAGCATGCATGTCATACTACCTGTATGTATGTGTGTGTGCTTGTTCAGGCATATGCTTACTAGTAGTGTCATCATNTCTC
TTGTGTGATTGATCAAAAGAGCTCCCCATGCATGTACATACACCCTCATCCTCAGTGTCAGTGCGGCACCTTTGATACGG
AACTAGCACTATTGCAGTCTTTTATGCCGACACTAGCACAACTTGATGAAACCATTTTTCCCTACATAATTGCCTCAGCG
TCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis