Browse Element(s) Details


Os.57183.1.S1_at

Description gb:AK111095.1
DB_XREF= gi:32996304
TID=Os.57183.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G07, full insert sequence.
FL= gb:AK111095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2963010/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57183.1.S1_at--512--10871Chr07:17423073..17423097 (25 bp)
TTGGATCCGCAAAGGTGTGCTGTAC
LOC_Os07g29630
Os.57183.1.S1_at--377--7471Chr07:17423059..17423083 (25 bp)
GTGTGCTGTACTAATCATGCTGCTT
LOC_Os07g29630
Os.57183.1.S1_at--1013--2011Chr07:17423050..17423074 (25 bp)
ACTAATCATGCTGCTTTTGCTTAAG
LOC_Os07g29630
Os.57183.1.S1_at--142--10271Chr07:17423036..17423059 (24 bp)
TTTGCTTAAGCACTCCGGTTTGTAG
LOC_Os07g29630
Os.57183.1.S1_at--863--1991NONE
ACTCCGGTTTGTAGATTGTGATGCA
NONE
Os.57183.1.S1_at--374--5031Chr07:17423002..17423026 (25 bp)
GCAGTACACACGAACATCATTTTTT
LOC_Os07g29630
Os.57183.1.S1_at--604--9191Chr07:17422960..17422984 (25 bp)
TGCCTATATGGCTGGTTGGATCCCA
LOC_Os07g29630
Os.57183.1.S1_at--384--7911Chr07:17422947..17422971 (25 bp)
GGTTGGATCCCATTCGTCAGTTAAT
LOC_Os07g29630
Os.57183.1.S1_at--979--3011Chr07:17422883..17422907 (25 bp)
AATGCTGCTCATTTGGCTTTGCAAA
LOC_Os07g29630
Os.57183.1.S1_at--1149--8291Chr07:17422869..17422893 (25 bp)
GGCTTTGCAAACATCGAACCTGGTA
LOC_Os07g29630
Os.57183.1.S1_at--21--5291Chr07:17422841..17422865 (25 bp)
GAATGTGGACACTGCTTAGATTGTA
LOC_Os07g29630
Target Sequence 
TTGGATCCGCAAAGGTGTGCTGTACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGATTGTGATGCAGTACAC
ACGAACATCATTTTTTTTACCCCCTTCTGTATATGCCTATATGGCTGGTTGGATCCCATTCGTCAGTTAATGCAAGTTTA
AAGTTGATTTAATTTTATTACGTTGAGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGG
ACACTGCTTAGATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis