Browse Element(s) Details


Os.57313.1.S1_at

Description gb:AK111281.1
DB_XREF= gi:32996490
TID=Os.57313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H04, full insert sequence.
FL= gb:AK111281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3171010/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein
LOC_Os12g31690NANA12+19051176..19052056hypothetical protein
LOC_Os12g31700Os.35344.3.S1_x_at5/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700Os.35344.18.S1_x_at4/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31700OsAffx.22940.5.S1_x_at1/1112+19053506..19057451transposon protein, putative, Mutator sub-class
LOC_Os12g31710Os.57313.1.S1_at10/1112+19060571..19064397universal stress protein family protein, expressed
LOC_Os12g31729OsAffx.31967.1.S1_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.18.S1_x_at10/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729Os.35344.3.S1_x_at9/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_x_at4/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31729OsAffx.22940.5.S1_at3/1112+19066150..19070759Transposable element protein, putative, MuDR
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57313.1.S1_at--72--6151Chr12:19063573..19063597 (25 bp)
GAGGGTGCCAACATCTGGAGACAAT
LOC_Os12g31710
Os.57313.1.S1_at--87--2991NONE
AATGAGGAGTATTTGCCCGGCTAAA
NONE
Os.57313.1.S1_at--478--1831Chr12:19061081..19061105 (25 bp)
ACGCGTCGAGCTTTCCTTGGTGGAA
LOC_Os12g31710
Os.57313.1.S1_at--948--1451Chr12:19060983..19061007 (25 bp)
AGAAGAGGTCGATCACATGGCGGCT
LOC_Os12g31710
Os.57313.1.S1_at--197--8031Chr12:19060843..19060867 (25 bp)
GGAGGGTATCTCATCACCACGAGGC
LOC_Os12g31710
Os.57313.1.S1_at--627--1711Chr12:19060828..19060852 (25 bp)
ACCACGAGGCGCCAGAGAGATTTCT
LOC_Os12g31710
Os.57313.1.S1_at--1010--9271Chr12:19060800..19060824 (25 bp)
TCCTGGCTTGATCGAGGTGTCCCAA
LOC_Os12g31710
Os.57313.1.S1_at--265--6151Chr12:19060787..19060811 (25 bp)
GAGGTGTCCCAAGAGCTTACAGTAT
LOC_Os12g31710
Os.57313.1.S1_at--788--7471Chr12:19060757..19060781 (25 bp)
GTGTGTGACCTAACTATGGCGTGTT
LOC_Os12g31710
Os.57313.1.S1_at--503--6611Chr12:19060633..19060657 (25 bp)
GATTGGTCGTTTCTCTTTCGCTCAA
LOC_Os12g31710
Os.57313.1.S1_at--16--10311Chr12:19060618..19060642 (25 bp)
TTTCGCTCAATTTCAACTCTCTTAC
LOC_Os12g31710
Target Sequence 
GAGGGTGCCAACATCTGGAGACAATGAGGAGTATTTGCCCGGCTAAAAGACCAGAGGTACGCGTCGAGCTTTCCTTGGTG
GAAGGGAAGGAGAGGGGGCCGGCGATTGTGGAGGCGGCGAGGAAGCAAGGCGTGTCGCTCCTCGTCATGGGCCAGAAGAA
GAGGTCGATCACATGGCGGCTGCTGGTGATGTGGATGACCGGCGGTAAAGGCGGCGGCGGAAGGGGCACCGCCGAGTACT
GCGTGCAGAACGCGGCGTGCATGGCGCTCGCCGTCCGGCGGAAGAGCCGGCGAGGGGGAGGGTATCTCATCACCACGAGG
CGCCAGAGAGATTTCTGGCTCCTGGCTTGATCGAGGTGTCCCAAGAGCTTACAGTATTGCATGTGTGTGACCTAACTATG
GCGTGTTGTAGGTGTCTGTTACCGGAGAGGTTAAGTTAATTATAGTGGAATAGGCATTCATGATATGAGAAATAATGCAC
AAGATGAGTGATGGTGTTTGGCGTTGGATTGGTCGTTTCTCTTTCGCTCAATTTCAACTCTCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis