Browse Element(s) Details


Os.5735.1.S1_at

Description gb:AK108201.1
DB_XREF= gi:32993410
TID=Os.5735.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative early nodulin gene (Enod) related protein (OSJNBa0071K18.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C12, full insert sequence.
FL= gb:AK108201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3258011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g32620NANA10+16758101..16758409hypothetical protein
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5735.1.S1_at--153--6751Chr10:16742537..16742561 (25 bp)
GTTCATGGCGGCCAACTCGTTCCGC
LOC_Os10g32580
Os.5735.1.S1_at--111--2671Chr10:16742892..16742916 (25 bp)
AAGCCGCACGCGTAGCTAGCTTGTG
LOC_Os10g32580
Os.5735.1.S1_at--95--4131Chr10:16742896..16742920 (25 bp)
CGCACGCGTAGCTAGCTTGTGTGAT
LOC_Os10g32580
Os.5735.1.S1_at--730--8671Chr10:16742915..16742939 (25 bp)
TGTGATGTGCTGGTGTTAACCGTGT
LOC_Os10g32580
Os.5735.1.S1_at--838--10471Chr10:16742930..16742954 (25 bp)
TTAACCGTGTTATGGCAAGGAGAGA
LOC_Os10g32580
Os.5735.1.S1_at--687--6011Chr10:16742949..16742973 (25 bp)
GAGAGAGACGTGTCCATGCCATGCA
LOC_Os10g32580
Os.5735.1.S1_at--119--7271Chr10:16742960..16742984 (25 bp)
GTCCATGCCATGCATGTGTGGCTGT
LOC_Os10g32580
Os.5735.1.S1_at--256--7491Chr10:16742989..16743013 (25 bp)
GTGGGTGCTGAGTACTCTCGCACGA
LOC_Os10g32580
Os.5735.1.S1_at--884--9111Chr10:16742994..16743018 (25 bp)
TGCTGAGTACTCTCGCACGAGGAAA
LOC_Os10g32580
Os.5735.1.S1_at--260--9511Chr10:16743004..16743028 (25 bp)
TCTCGCACGAGGAAATTAATTGGAA
LOC_Os10g32580
Os.5735.1.S1_at--213--6431Chr10:16743032..16743056 (25 bp)
GATAATAATTCCGATTTTCCTAACT
LOC_Os10g32580
Target Sequence 
GTTCATGGCGGCCAACTCGTTCCGCGTCCACTTCGACTTCATCAGCAACCCGGCGGCGTTCGGGTTCGCCACGGCGAGGG
ACGCGTGCTGCGGCCAGGGCCCCAACAACGGCCTCGGCCTCTGCACTGCCATGTCCAACCTCTGCGCCGACCGCGACGCC
TACGTGTTCTGGGACGCCTACCACCCCACGGAGAAGGCCAACCGGATCATCGTCAGCCAGTTCGTCAGGGGGTCGCTCGA
CTACGTCTCGCCGCTCAACCTCAGCGCCGCGCTGGAGATCGACGCCGCGGAGGAGGCGGCGGCGGCGGCGGCGAGGCGCC
GGCGGCAGCGCGCGGTGGCGAGGCTCGTCGGCGACAAGCCGCACGCGTAGCTAGCTTGTGTGATGTGCTGGTGTTAACCG
TGTTATGGCAAGGAGAGAGACGTGTCCATGCCATGCATGTGTGGCTGTTGGGGTGGGTGCTGAGTACTCTCGCACGAGGA
AATTAATTGGAAGCTGATAATAATTCCGATTTTCCTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis