Browse Element(s) Details


Os.57510.1.S1_x_at

Description gb:AF435644.1
DB_XREF= gi:17385968
TID=Os.57510.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57510 (NCBI UniGene Cluster)
UG_TITLE=CSLD4 mRNA, partial cds
DEF=Oryza sativa CSLD4 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3689011/11cellulose synthase family protein, putative, expressed
LOC_Os06g021801/11cellulose synthase-like protein D4, putative, expressed
LOC_Os06g229801/11cellulose synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57510.1.S1_x_at--56--10511Chr12:22570325..22570349 (25 bp)
TTCAACGCCGGGATGTACCCCTTCA
LOC_Os12g36890
Os.57510.1.S1_x_at--605--9571Chr12:22570255..22570279 (25 bp)
TCTTCTCCGGCAAGTTCATCGTGCA
LOC_Os12g36890
Os.57510.1.S1_x_at--260--2831Chr12:22570244..22570268 (25 bp)
AAGTTCATCGTGCAGCGACTCAGCG
LOC_Os12g36890
Os.57510.1.S1_x_at--1069--3831Chr12:22570166..22570190 (25 bp)
CTGCTCGAGATCAAGTGGTCCGGGA
LOC_Os12g36890
Os.57510.1.S1_x_at--684--9671Chr12:22570141..22570165 (25 bp)
TCACGCTCCACGAGTGGTGGCGCAA
LOC_Os12g36890
Os.57510.1.S1_x_at--1104--4751Chr12:22570068..22570092 (25 bp)
GCTGCAGGGCCTACTCAAGGTGATC
LOC_Os12g36890
Os.57510.1.S1_x_at--612--9891Chr12:22570057..22570081 (25 bp)
TACTCAAGGTGATCGCCGGCGTGGA
LOC_Os12g36890
Os.57510.1.S1_x_at--366--1571Chr12:22569923..22569947 (25 bp)
AGCTACCTGATGGTGCCGCCGGTGA
LOC_Os12g36890
Os.57510.1.S1_x_at--641--4212Chr12:22569908..22569932 (25 bp)
CCGCCGGTGACGATCATGATGGTGA
LOC_Os12g36890
Os.57510.1.S1_x_at--97--8751Chr12:22569847..22569871 (25 bp)
TGTACAGCGAGTTCCCGCAGTGGAG
LOC_Os12g36890
Os.57510.1.S1_x_at--827--9553Chr06:13416716..13416997 (25 bp)
TCTTCAGCTTCTGGGTGCTGTGCCA
LOC_Os06g22980
Target Sequence 
TTCAACGCCGGGATGTACCCCTTCACCTCCGTGTTCCTCCTCGCCTACTGCCTCCTCCCGGCCGTCTCCCTCTTCTCCGG
CAAGTTCATCGTGCAGCGACTCAGCGCCACCTTCCTCGCCTTCCTCCTCGTCATCACCCTCACCCTCTGCCTCCTCGCCC
TGCTCGAGATCAAGTGGTCCGGGATCACGCTCCACGAGTGGTGGCGCAACGAGCAGTTCTGGGTGATCGGCGGCACCAGC
GCGCACCCGGCCGCCGTGCTGCAGGGCCTACTCAAGGTGATCGCCGGCGTGGACATCTCCTTCACGCTGACCTCCAAGCC
GGGGAACGGCGGCGGCGATGGCGGGGTCGGCGGCGAGGGGAACGACGACGAGGCGTTCGCGGAGCTGTACGAGGTGAGGT
GGAGCTACCTGATGGTGCCGCCGGTGACGATCATGATGGTGAACGCGGTGGCGATCGCGGTGGCGGCGGCGAGGACGCTG
TACAGCGAGTTCCCGCAGTGGAGCAAGCTGCTCGGCGGCGCCTTCTTCAGCTTCTGGGTGCTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57510.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis