Browse Element(s) Details


Os.5846.1.S1_at

Description gb:AK070570.1
DB_XREF= gi:32980594
TID=Os.5846.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055N15, full insert sequence.
FL= gb:AK070570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g468841/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5846.1.S1_at--308--10871Chr04:22678268..22678292 (25 bp)
TTGGATTTGGCGCTGAGACCTCATG
NONE
Os.5846.1.S1_at--878--5951Chr04:22677731..22678172 (25 bp)
GAGCAAGGACATACCAGGCTGCACC
NONE
Os.5846.1.S1_at--33--1731Chr04:22677719..22677743 (25 bp)
ACCAGGCTGCACCAAATTTATTAAG
NONE
Os.5846.1.S1_at--528--5351Chr04:22677655..22677679 (25 bp)
GAAGATATCCGCAATACCGGTGCTA
NONE
Os.5846.1.S1_at--844--311Chr04:22677642..22677666 (25 bp)
ATACCGGTGCTAACCATTGGTCTTT
NONE
Os.5846.1.S1_at--645--2931Chr04:22677612..22677636 (25 bp)
AAGGCACCATACCAACAGCCATGGA
NONE
Os.5846.1.S1_at--187--2172Chr03:26469432..26469451 (20 bp)
ACAGCCATGGATGCATTTCGTGATT
LOC_Os03g46884
Os.5846.1.S1_at--930--191Chr04:22677584..22677608 (25 bp)
ATTTCGTGATTACCTAGCCGGTCGT
NONE
Os.5846.1.S1_at--825--9991Chr04:22677570..22677594 (25 bp)
TAGCCGGTCGTATTGCAGGTTGATG
NONE
Os.5846.1.S1_at--268--171Chr04:22677533..22677557 (25 bp)
ATTTTGTGTTGTTTTGCGGTCTTAT
NONE
Os.5846.1.S1_at--682--7811Chr04:22677516..22677540 (25 bp)
GGTCTTATGCTCTATCTTTCGATGA
NONE
Target Sequence 
TTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGG
AGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTG
GCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAA
GGCACCATACCAACAGCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATCGTATT
TTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis