Browse Element(s) Details


Os.5850.1.S1_at

Description gb:AF364176.1
DB_XREF= gi:19880312
TID=Os.5850.1
CNT=84
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.5850 (NCBI UniGene Cluster)
DEF=Oryza sativa putative EREBP-type transcription factor mRNA, complete cds.
PROD=putative EREBP-type transcription factor
FL= gb:AF364176.1 gb:AK104723.1 gb:AK111690.1 gb:AK104576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2642011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5850.1.S1_at--799--10091Chr09:15960972..15960996 (25 bp)
TATGGTGAACCTGCTTACCTGACAG
LOC_Os09g26420
Os.5850.1.S1_at--812--10451Chr09:15960986..15961010 (25 bp)
TTACCTGACAGGTGGAGCGCCAAAG
LOC_Os09g26420
Os.5850.1.S1_at--323--8171Chr09:15961018..15961042 (25 bp)
GGAACAACTATGGTATCGCCGTGCC
LOC_Os09g26420
Os.5850.1.S1_at--105--2311Chr09:15961049..15961073 (25 bp)
AAATGGCATGCCTAATCTCGCACAA
LOC_Os09g26420
Os.5850.1.S1_at--723--4031Chr09:15961088..15961112 (25 bp)
CGATCCCGAGATGAAGTATTTGCCA
LOC_Os09g26420
Os.5850.1.S1_at--258--6891Chr09:15961103..15961127 (25 bp)
GTATTTGCCATTACCTTATGTTGAG
LOC_Os09g26420
Os.5850.1.S1_at--841--651Chr09:15961138..15961162 (25 bp)
ATGAATCAATGGACAACCTTCTGCA
LOC_Os09g26420
Os.5850.1.S1_at--134--4731Chr09:15961230..15961254 (25 bp)
GCTGGTGCCTACTGAGGAGACGAAA
LOC_Os09g26420
Os.5850.1.S1_at--987--10591Chr09:15961257..15961281 (25 bp)
TTCTGGTCAGTGTGGTCTGTCACTA
LOC_Os09g26420
Os.5850.1.S1_at--1081--7171Chr09:15961271..15961292 (22 bp)
GTCTGTCACTAGCAAACCATGTTGA
LOC_Os09g26420
Os.5850.1.S1_at--364--9671Chr09:15961486..15961510 (25 bp)
TCAGCTGTACTCTCTATGACAATGT
LOC_Os09g26420
Target Sequence 
TATGGTGAACCTGCTTACCTGACAGGTGGAGCGCCAAAGAGAATGAGGAACAACTATGGTATCGCCGTGCCCCAGGGAAA
TGGCATGCCTAATCTCGCACAAAACATGCCCACCTTCGATCCCGAGATGAAGTATTTGCCATTACCTTATGTTGAGAGCA
GCTCAGATGAATCAATGGACAACCTTCTGCAAAATGATGCTACACAAGACGGGGCAAGCAACGAGGGCATCTGGAGCCTT
GATGAGCTGCTCATGGCAGCTGGTGCCTACTGAGGAGACGAAATGTTCTGGTCAGTGTGGTCTGTCACTAGCAAACCATG
TTGAATGTGTATGGCCAAGATGAAGAGCTGGTGATGTCTGCTATGTTTTGTAGAGGGATGCTACCAAAGTAATGCTAGAA
TATTACAAGCTGCTATCAGCTGTACTCTCTATGACAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis