Browse Element(s) Details


Os.5888.1.S1_at

Description gb:CA766953
DB_XREF= gi:27548937
DB_XREF=AF53-Rpf_13_G24_T7_092.ab1
CLONE=C0004776
TID=Os.5888.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5888 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187413.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4183011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5888.1.S1_at--485--1171Chr04:24557704..24557728 (25 bp)
AGTCAAATTTCAACCAACCTCAGCA
LOC_Os04g41830
Os.5888.1.S1_at--908--7951Chr04:24557518..24557542 (25 bp)
GGATAACATCTCTCTACTGTGCCAA
LOC_Os04g41830
Os.5888.1.S1_at--380--5491Chr04:24556866..24556890 (25 bp)
GAACATATATCCTCAGTAGTCTCAA
LOC_Os04g41830
Os.5888.1.S1_at--890--10591Chr04:24556798..24556822 (25 bp)
TTCTGTTCGTTCATTGTGTAGCTCC
LOC_Os04g41830
Os.5888.1.S1_at--366--10011Chr04:24556780..24556804 (25 bp)
TAGCTCCTCTGGTCCTTGATCTAAT
LOC_Os04g41830
Os.5888.1.S1_at--27--6431Chr04:24556763..24556787 (25 bp)
GATCTAATCTGTTCCTTTCAGCATG
LOC_Os04g41830
Os.5888.1.S1_at--552--3391Chr04:24556745..24556769 (25 bp)
CAGCATGTTCCGTCTAGTACTCTAG
LOC_Os04g41830
Os.5888.1.S1_at--847--1171Chr04:24556730..24556754 (25 bp)
AGTACTCTAGATTGTTGACCTTCCA
LOC_Os04g41830
Os.5888.1.S1_at--125--391Chr04:24556693..24556717 (25 bp)
ATCAGCCGGTTGGAACATGTACCAT
LOC_Os04g41830
Os.5888.1.S1_at--129--811Chr04:24556655..24556679 (25 bp)
ATGGTTTCCTTCTACAGCAGTGTCA
LOC_Os04g41830
Os.5888.1.S1_at--188--1111Chr04:24556637..24556661 (25 bp)
AGTGTCACCTTCAAACTCTGGCATG
LOC_Os04g41830
Target Sequence 
AGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACT
CAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCNCCGCTACCAGTGAAGATAAACGAGGAGC
TAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTGATAGTGAATGAACATATATCCTCAGT
AGTCTCAAGAGCTCTNTTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCT
GGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCAAATC
AGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTCTACAGCAGTGTCACCTTCAAACTCTGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis