Browse Element(s) Details


Os.5933.1.S1_at

Description gb:AY554029.1
DB_XREF= gi:46242598
GEN=hox16
TID=Os.5933.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5933 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone R4057 Hox16 (hox16) mRNA, complete cds.
PROD=Hox16
FL= gb:AY559045.1 gb:AK119592.1 gb:AK058364.1 gb:AY554029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g497009/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009653biological_processmorphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5933.1.S1_at--322--7071Chr02:30377416..30377440 (25 bp)
GTAATGTTGAGTTTCGATCGGCTAT
LOC_Os02g49700
Os.5933.1.S1_at--829--711Chr02:30377419..30377443 (25 bp)
ATGTTGAGTTTCGATCGGCTATGAG
LOC_Os02g49700
Os.5933.1.S1_at--1071--3491Chr02:30377467..30377491 (25 bp)
CATGGTATGGTAGGGTAACACATCG
LOC_Os02g49700
Os.5933.1.S1_at--280--6871Chr02:30377476..30377500 (25 bp)
GTAGGGTAACACATCGGTGAATCAA
LOC_Os02g49700
Os.5933.1.S1_at--612--3311Chr02:30377485..30377509 (25 bp)
CACATCGGTGAATCAAATCTGTCAT
LOC_Os02g49700
Os.5933.1.S1_at--903--3971Chr02:30377490..30377514 (25 bp)
CGGTGAATCAAATCTGTCATGGTGA
LOC_Os02g49700
Os.5933.1.S1_at--576--471Chr02:30377501..30377525 (25 bp)
ATCTGTCATGGTGATGTACGAGAAT
LOC_Os02g49700
Os.5933.1.S1_at--596--9051NONE
TGCATGGAGGCACAGTACTCTTTTC
NONE
Os.5933.1.S1_at--566--931NONE
AGGCACAGTACTCTTTTCAATGGCA
NONE
Os.5933.1.S1_at--503--3311Chr02:30377563..30377584 (22 bp)
CACAGTACTCTTTTCAATGGCACAT
LOC_Os02g49700
Os.5933.1.S1_at--277--851Chr02:30377576..30377600 (25 bp)
ATGGCACATACCAAATCATGTCGTC
LOC_Os02g49700
Target Sequence 
GTAATGTTGAGTTTCGATCGGCTATGAGAAGGAAGGAGGTGTATGCATGTGCATGGTATGGTAGGGTAACACATCGGTGA
ATCAAATCTGTCATGGTGATGTACGAGAATTGAAGAACATGGGGGTAGCAATAAGTGCATGGAGGCACAGTACTCTTTTC
AATGGCACATACCAAATCATGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis