Browse Element(s) Details


Os.6053.1.S1_at

Description gb:AK071766.1
DB_XREF= gi:32981789
TID=Os.6053.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full insert sequence.
FL= gb:AK071766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4554011/11rhamnose biosynthetic enzyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009225biological_processnucleotide-sugar metabolism
GO:0010192biological_processmucilage biosynthesis
GO:0010214biological_processseed coat development
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
GO:0008831molecular_functiondTDP-4-dehydrorhamnose reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6053.1.S1_at--73--8191Chr02:27706709..27706733 (25 bp)
GGAAGAACTTTACCCTGGAGGAGCA
LOC_Os02g45540
Os.6053.1.S1_at--667--2651Chr02:27706733..27706757 (25 bp)
AAGCCAAGGTCATAGTTGCACCGAG
LOC_Os02g45540
Os.6053.1.S1_at--918--6531Chr02:27706774..27706798 (25 bp)
GATTGTACCAAGCTGAAGGCGGAAT
LOC_Os02g45540
Os.6053.1.S1_at--351--9851Chr02:27706921..27706945 (25 bp)
TAAATTGACATTTCTCTCCCTGGTG
LOC_Os02g45540
Os.6053.1.S1_at--896--191Chr02:27706930..27706954 (25 bp)
ATTTCTCTCCCTGGTGACAATCAAT
LOC_Os02g45540
Os.6053.1.S1_at--1117--8851Chr02:27706964..27706988 (25 bp)
TGATGACTCTTTCCCTGTGTGTGCA
LOC_Os02g45540
Os.6053.1.S1_at--519--931Chr02:27707059..27707083 (25 bp)
AGGCAAGGTGCCATATAGTTCAACT
LOC_Os02g45540
Os.6053.1.S1_at--368--2531Chr02:27707080..27707104 (25 bp)
AACTTTTGTATGTCTTCTGGATCGT
LOC_Os02g45540
Os.6053.1.S1_at--93--8051Chr02:27707133..27707157 (25 bp)
GGAGATTCCTCTGTTTGTATCTTAC
LOC_Os02g45540
Os.6053.1.S1_at--1122--10731Chr02:27707175..27707199 (25 bp)
TTGCACTGCGTGTTGTTCAATAGGA
LOC_Os02g45540
Os.6053.1.S1_at--24--5591Chr02:27707198..27707222 (25 bp)
GAAATGGCTTTGGACTTTCCTTCAT
LOC_Os02g45540
Target Sequence 
GGAAGAACTTTACCCTGGAGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGCTG
AAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCAAGCCAAATCAGAAGACGTCCAA
GGCTTGACNAAATGGAACNGGTCTGCNACNACNAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGG
TGACAATCAATAAGCATGCNATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAANCAGATAGGTTTCTCATAGGAAG
TCATACCCCNGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGAT
CGTATGAATACCNGTGGGAAATGGGTAAGGNTGGAGATTCCTCTGTTTGTATCTTACAATNGGAATACAGTCAGTTGCAC
TGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis