Browse Element(s) Details


Os.6078.1.S1_at

Description gb:CR286062
DB_XREF= gi:44672628
DB_XREF=CR286062
CLONE=y724a05p3
TID=Os.6078.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.13 (OSJNBa0042L16.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3494011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34900OsAffx.26335.1.S1_at11/114+21019646..21020905hypothetical protein
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6078.1.S1_at--545--8551Chr04:21046104..21046128 (25 bp)
TGGAGATGCAGAGGTCCCACAGCCT
LOC_Os04g34940
Os.6078.1.S1_at--1075--891Chr04:21046046..21046070 (25 bp)
AGGCGTGGATCCTTTGGACCTGGCA
LOC_Os04g34940
Os.6078.1.S1_at--700--3011Chr04:21045959..21045983 (25 bp)
AATGCACCTCCTATGCAAGGGCATG
LOC_Os04g34940
Os.6078.1.S1_at--752--10031Chr04:21045474..21045498 (25 bp)
TAGAGATTGGCTGGCTCGTCAACTA
LOC_Os04g34940
Os.6078.1.S1_at--888--10131Chr04:21045451..21045475 (25 bp)
TATCCAATGCAGTGACTCGTCTTCA
LOC_Os04g34940
Os.6078.1.S1_at--213--10171Chr04:21045414..21045438 (25 bp)
TATCTTCTGCTGTAACTTAATCTGT
LOC_Os04g34940
Os.6078.1.S1_at--918--8752Chr06:25793759..25793778 (20 bp)
TGTAGCTAGGTTATTCTTCCATTTG
NONE
Os.6078.1.S1_at--830--9051Chr04:21045299..21045323 (25 bp)
TGCTTTTTCCTCAGTTCTATTACCA
LOC_Os04g34940
Os.6078.1.S1_at--153--10471Chr04:21045280..21045304 (25 bp)
TTACCATTCCAACTGTGCATTGTAG
LOC_Os04g34940
Os.6078.1.S1_at--916--4951Chr04:21045256..21045280 (25 bp)
GCATCTTTTTAGTGTGTTGTCCTCA
LOC_Os04g34940
Os.6078.1.S1_at--878--7411Chr04:21045243..21045267 (25 bp)
GTGTTGTCCTCAAATCTAGCTCAGA
LOC_Os04g34940
Target Sequence 
TGGAGATGCAGAGGTCCCACAGCCTCAGGGATATCGTGGCAGGGGAAGAGGAANGGGCAGGCGTGGATCCTTTGGACCTG
GCAGGGGTTATGGTGGAGATGGTTTTGCAATGGAAGAAGCTGGTGGATATGATGATGGGGAGCCTAATGCACCTCCTATG
CAAGGGCATGAAGGTGGCAGAGGAAGGGGCCGTGGTCGAGGCCGAGGCNGTGGACGTGGTCGTGGTGGAGGCCGTGGCCG
TGGACCTCCTCCTCCTCCTCAAGAGTAGAGATTGGCTGGCTCGTCAACTATCCAATGCAGTGACTCGTCTTCATTAGATT
AGTGTTATCTTCTGCTGTAACTTAATCTGTTTAGGTTTTTATGTTCAAAAGTTTGACATAGTGACTTCAGTGTGGGGGAT
GCGGCTAGTTATGATTTTGTAGCTAGGTTATTCTTCCATTTGCTTTTTCCTCAGTTCTATTACCATTCCAACTGTGCATT
GTAGCATCTTTTTAGTGTGTTGTCCTCAAATCTAGCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis