Browse Element(s) Details


Os.6090.2.S1_at

Description gb:AK101123.1
DB_XREF= gi:32986332
TID=Os.6090.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.28 (P0492F05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025J12, full insert sequence.
FL= gb:AK101123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6090.2.S1_at--994--6511Chr01:6981589..6981613 (25 bp)
GATATTCCATAGTAACCTGCATCAT
LOC_Os01g12670
Os.6090.2.S1_at--377--1171Chr01:6981599..6981623 (25 bp)
AGTAACCTGCATCATGAATCACCAC
LOC_Os01g12670
Os.6090.2.S1_at--819--4951Chr01:6981665..6981689 (25 bp)
GCATTTGATCAAACTCCCAGTTCAG
LOC_Os01g12670
Os.6090.2.S1_at--433--4171Chr01:6981680..6981704 (25 bp)
CCCAGTTCAGCCCAAGATTATCTTG
LOC_Os01g12670
Os.6090.2.S1_at--561--7431Chr01:6981773..6981797 (25 bp)
GTGTTTATTCAGTTAGTACCACAAT
LOC_Os01g12670
Os.6090.2.S1_at--464--10351Chr01:6981851..6981875 (25 bp)
TTTATCTACGATGCAATCGGTCCTG
LOC_Os01g12670
Os.6090.2.S1_at--360--5191Chr01:6981863..6981887 (25 bp)
GCAATCGGTCCTGAGAGCACTTTAA
LOC_Os01g12670
Os.6090.2.S1_at--761--7431Chr01:6981933..6981957 (25 bp)
GTGTTTGTTGGATCAGATACCCTGG
LOC_Os01g12670
Os.6090.2.S1_at--622--7511Chr01:6982018..6982042 (25 bp)
GTGGACCGGCAAATCTAGACTTGGA
LOC_Os01g12670
Os.6090.2.S1_at--27--5691Chr01:6982035..6982059 (25 bp)
GACTTGGAACTGTATCTAGCAATAG
LOC_Os01g12670
Os.6090.2.S1_at--379--1591Chr01:6982108..6982132 (25 bp)
AGCGGATTTGTTCTTTAGCTTATCA
LOC_Os01g12670
Target Sequence 
GATATTCCATAGTAACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTTCAGCAT
TTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTGTATGAAAATTACATATTCATAACATA
ACCTTAGTATTAATTATAGTTATAGTGTTTATTCAGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTT
AATATGAGGTTTTCATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTTCTACTT
TGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAGATTTAAACCGAGGAATGTTTTGGATT
CAATTTTCTGAGTAAGATAGGACTAAGAAGTGGACCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGAT
ACGAGCAAATAACTTCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6090.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis