Browse Element(s) Details


Os.6093.1.S1_a_at

Description gb:AK064800.1
DB_XREF= gi:32974818
TID=Os.6093.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.6093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full insert sequence.
FL= gb:AK064800.1 gb:AK062067.1 gb:AK061400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1070011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed
LOC_Os02g10720Os.11526.1.S1_at11/112+5640780..5644590expressed protein
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6093.1.S1_a_at--800--8731Chr02:5628472..5628496 (25 bp)
TGTCATGGAGTTCCGCAGCTCAACT
LOC_Os02g10700
Os.6093.1.S1_a_at--400--2551Chr02:5628451..5628475 (25 bp)
AACTGCCGGTGTCACCAGTAGTCGG
LOC_Os02g10700
Os.6093.1.S1_a_at--701--9171Chr02:5628407..5628431 (25 bp)
TGCCGACGACGCTGGAGTGCCTGCA
LOC_Os02g10700
Os.6093.1.S1_a_at--608--8551Chr02:5628395..5628419 (25 bp)
TGGAGTGCCTGCAGACTTACCCTGT
LOC_Os02g10700
Os.6093.1.S1_a_at--557--2031Chr02:5628381..5628405 (25 bp)
ACTTACCCTGTGTGTATGGTTACTG
LOC_Os02g10700
Os.6093.1.S1_a_at--655--6771Chr02:5628363..5628387 (25 bp)
GTTACTGAGTCTGTTGGTGTCTTGA
LOC_Os02g10700
Os.6093.1.S1_a_at--296--3911Chr02:5628243..5628267 (25 bp)
CTGGCCATTGCAAGGCGCATACTAG
LOC_Os02g10700
Os.6093.1.S1_a_at--516--8391Chr02:5628230..5628254 (25 bp)
GGCGCATACTAGAGCCTTGTCATGA
LOC_Os02g10700
Os.6093.1.S1_a_at--1013--6631Chr02:5628193..5628217 (25 bp)
GTTGTTTTTTCACCAGATCCCTGTT
LOC_Os02g10700
Os.6093.1.S1_a_at--346--1271Chr02:5628179..5628203 (25 bp)
AGATCCCTGTTTTTACCGGCATATT
LOC_Os02g10700
Os.6093.1.S1_a_at--810--8111Chr02:5628149..5628173 (25 bp)
GGACTGTAATCTTTGCAACCTTCTC
LOC_Os02g10700
Target Sequence 
TGTCATGGAGTTCCGCAGCTCAACTGCCGGTGTCACCAGTAGTCGGCAGCGCCGGTGTTNCAGGCTGCCGACGACGCTGG
AGTGCCTGCAGACTTACCCTGTGTGTATGGTTACTGAGTCTGTTGGTGTCTTGAGGTCATGTGTGATGATGTTTTCGGTA
GTGTGTAAGGGTCATAGAGGGTTGATTTTTTGTTACAGGTACTCTTGGGAATGCCTGGTGTTGGGGGATCTGGCCATTGC
AAGGCGCATACTAGAGCCTTGTCATGACAGCCTTGTATGGTTGTTTTTTCACCAGATCCCTGTTTTTACCGGCATATTGT
TGAGGACTGTAATCTTTGCAACCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6093.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis