Browse Element(s) Details


Os.6242.1.S1_s_at

Description gb:AU166808
DB_XREF= gi:12405207
DB_XREF=AU166808
CLONE=C50882
TID=Os.6242.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6242 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4160011/11expressed protein
LOC_Os04g050301/11Serine-rich 25 kDa antigen protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6242.1.S1_s_at--975--7751Chr07:24932951..24932975 (25 bp)
GGTGCAGCGTCATGTGATGGCCATC
LOC_Os07g41600
Os.6242.1.S1_s_at--1081--1911Chr07:24932902..24932926 (25 bp)
ACGGGAGCAATCAGTGCGTGTGATC
LOC_Os07g41600
Os.6242.1.S1_s_at--705--3071Chr07:24932894..24932918 (25 bp)
AATCAGTGCGTGTGATCACTCTCGC
LOC_Os07g41600
Os.6242.1.S1_s_at--198--2192Chr07:7300666..7300690 (25 bp)
ACACTCACTCATCACTAGCTCATGG
NONE
Os.6242.1.S1_s_at--2--3571Chr07:24932858..24932882 (25 bp)
CATCACTAGCTCATGGCCAGTGGTA
LOC_Os07g41600
Os.6242.1.S1_s_at--975--7451Chr07:24932796..24932820 (25 bp)
GTGTCGCCTTCTTCTTGTTTATTAT
LOC_Os07g41600
Os.6242.1.S1_s_at--855--3652Chr04:2429160..2429212 (24 bp)
CTTCTTCTTGTTTATTATGCCTGTG
LOC_Os04g05030
Os.6242.1.S1_s_at--51--10412Chr07:24932753..24932777 (25 bp)
TTATTTAGGGTGTTGAGTTGTGCAT
LOC_Os07g41600
Os.6242.1.S1_s_at--1074--1231Chr07:24932738..24932762 (25 bp)
AGTTGTGCATGTGAACAGTTGAGTT
LOC_Os07g41600
Os.6242.1.S1_s_at--948--6731Chr07:24932708..24932732 (25 bp)
GTTCTTGGTGTCTAGTTGGATCTTC
LOC_Os07g41600
Os.6242.1.S1_s_at--952--431Chr07:24932689..24932713 (25 bp)
ATCTTCTTCCCTTTATGACTATCTG
LOC_Os07g41600
Target Sequence 
GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTC
GCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTC
GCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGT
GATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6242.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis