Browse Element(s) Details


Os.6256.2.S1_at

Description gb:AK110304.1
DB_XREF= gi:32995513
TID=Os.6256.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-A09, full insert sequence.
FL= gb:AK110304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g568105/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6256.2.S1_at--980--6171Chr02:34813607..34813631 (25 bp)
GAGGAGTTCTACCAGCTGGATACTA
LOC_Os02g56810
Os.6256.2.S1_at--125--6331Chr02:34813634..34813658 (25 bp)
GATGCAACAGTCAACCTCGGAGGCT
LOC_Os02g56810
Os.6256.2.S1_at--180--3091Chr02:34813662..34813686 (25 bp)
AATCAAGTCGCGAGGTTGCTCTCAC
LOC_Os02g56810
Os.6256.2.S1_at--1133--4191Chr02:34813692..34813716 (25 bp)
CCCGTCGTCGTCCTGAAGAAGAGAT
LOC_Os02g56810
Os.6256.2.S1_at--1063--91Chr02:34813723..34813747 (25 bp)
AGTACTGTTCCCTCGGACAAGAGCT
LOC_Os02g56810
Os.6256.2.S1_at--589--6531Chr02:34813950..34813974 (25 bp)
GATTTCCGATGCCTGAAGCTTTGGT
NONE
Os.6256.2.S1_at--755--10291Chr02:34814029..34814053 (25 bp)
TTTCCTCTTCTTGTGGGTAATCTGA
NONE
Os.6256.2.S1_at--531--8931Chr02:34814051..34814075 (25 bp)
TGACGGACCTTTTTCTCAATTGCTG
NONE
Os.6256.2.S1_at--624--2551Chr02:34814082..34814106 (25 bp)
AACTGAACTTCTGTAGCCGACATCT
NONE
Os.6256.2.S1_at--905--4511Chr02:34814097..34814121 (25 bp)
GCCGACATCTTGGTTCAGTGCTGGA
NONE
Os.6256.2.S1_at--616--3911Chr02:34814117..34814141 (25 bp)
CTGGACGATTGTCTACATCTGGTTT
NONE
Target Sequence 
GAGGAGTTCTACCAGCTGGATACTATAGATGCAACAGTCAACCTCGGAGGCTCGAAATCAAGTCGCGAGGTTGCTCTCAC
TCGATCCCGTCGTCGTCCTGAAGAAGAGATCAGTGCAGTACTGTTCCCTCGGACAAGAGCTGACGGCTGGATGGAGGTGG
AGCTAGGCGAGTTCTTCAACGAGGAAGGTGAAGATGGAAACGTGAACATCAGAATCTTTGGTAAAGGACCCAATTGGAAG
AAAGGTCTTATTGTGCTGGGCATTGAGATTAGAATTAGGAAATCTGGCAGATGATCGAGCTTCTAGGATCAAAGATGCGT
CTTGGGAGTACTGAAATGTATAAGATTTCCGATGCCTGAAGCTTTGGTGTTTTAGTGGCATTTGCTTTTGCTGCTGCTAG
TGATGGGCAAAACTAGAGGGTGTTTCCTCTTCTTGTGGGTAATCTGACGGACCTTTTTCTCAATTGCTGGGGACAAACTG
AACTTCTGTAGCCGACATCTTGGTTCAGTGCTGGACGATTGTCTACATCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6256.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis