Browse Element(s) Details


Os.6336.2.S1_at

Description gb:AK073125.1
DB_XREF= gi:32983148
TID=Os.6336.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome c1 precursor (P0492G09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033010L17, full insert sequence.
FL= gb:AK073125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7096010/11Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005746cellular_componentmitochondrial electron transport chain
GO:0045153molecular_functionelectron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6336.2.S1_at--802--5771Chr01:41404872..41404896 (25 bp)
GACGAACACCGCATAGATAGGCATT
LOC_Os01g70960
Os.6336.2.S1_at--945--10311Chr01:41404993..41405017 (25 bp)
TTTCACCAATTTTGTTCTACTCCGC
LOC_Os01g70960
Os.6336.2.S1_at--833--6711Chr01:41405006..41405030 (25 bp)
GTTCTACTCCGCTTGAAATTTTGGT
LOC_Os01g70960
Os.6336.2.S1_at--619--10231Chr01:41405056..41405080 (25 bp)
TATTGTGCCACTTTCTGGTCAGGAA
LOC_Os01g70960
Os.6336.2.S1_at--888--1711Chr01:41405165..41405189 (25 bp)
ACCAGCTTGCAAACATTTCCAGTGA
LOC_Os01g70960
Os.6336.2.S1_at--140--2411Chr01:41405189..41405213 (25 bp)
AAACACATTTTTCGCTCTTGGTTGA
LOC_Os01g70960
Os.6336.2.S1_at--908--6031NONE
GAGATCGCCTGCTAAAGTGCTTCTG
NONE
Os.6336.2.S1_at--49--10611Chr01:41405232..41405256 (25 bp)
TTCTGTTATTGTTACTCCTCCTAGT
LOC_Os01g70960
Os.6336.2.S1_at--1121--7331Chr01:41405255..41405279 (25 bp)
GTGCACTCCCTAAATTTGCTTTTGC
LOC_Os01g70960
Os.6336.2.S1_at--812--10271Chr01:41405269..41405293 (25 bp)
TTTGCTTTTGCAGTGTCCTAACCTT
LOC_Os01g70960
Os.6336.2.S1_at--697--9251Chr01:41405284..41405308 (25 bp)
TCCTAACCTTCTGGCGTTGATTTGA
LOC_Os01g70960
Target Sequence 
GACGAACACCGCATAGATAGGCATTATACCAGCATGTAATATACAAAATACCCTTTCTTAATTGGTTATGTACTGTGTGT
GCAAAAACTTGTGTTCTTGGTTTGTTTTTTTTGAACAACGTTTTCACCAATTTTGTTCTACTCCGCTTGAAATTTTGGTC
AGTAATACATGGAATCTTGGAGTGTATTGTGCCACTTTCTGGTCAGGAAACCTGGATTATTTCATAGAACTTGAAAGGAT
CTAGCAGCTTGCAAATAGTACTGTTGAATATTCTAATACTGAATTAAGGATTTACCAGCTTGCAAACATTTCCAGTGAAA
CACATTTTTCGCTCTTGGTTGAGATCGCCTGCTAAAGTGCTTCTGTTATTGTTACTCCTCCTAGTGCACTCCCTAAATTT
GCTTTTGCAGTGTCCTAACCTTCTGGCGTTGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6336.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis