Browse Element(s) Details


Os.6386.1.S1_at

Description gb:AK069653.1
DB_XREF= gi:32979677
TID=Os.6386.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031J12, full insert sequence.
FL= gb:AK069653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4867010/11MSF1-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6386.1.S1_at--1023--4991Chr02:29794067..29794091 (25 bp)
GCAGGAGACCACGATCCGGTGCCGA
LOC_Os02g48670
Os.6386.1.S1_at--502--6011Chr02:29793991..29794015 (25 bp)
GAGAGATTCCTGCAGAACAGCGCCA
LOC_Os02g48670
Os.6386.1.S1_at--990--7951Chr02:29793945..29793969 (25 bp)
GGATCTGCCGGTATCTCGAGGCCGA
LOC_Os02g48670
Os.6386.1.S1_at--1051--471Chr02:29793895..29793919 (25 bp)
ATCTGAGTTGGCCTGGTTTGCGCCT
LOC_Os02g48670
Os.6386.1.S1_at--186--10871Chr02:29793864..29793888 (25 bp)
TTGGCCTTCCTTGATCTGATCGGAT
LOC_Os02g48670
Os.6386.1.S1_at--570--5311Chr02:29793838..29793862 (25 bp)
GAAGGATTCGCTCGATCTGTGCTGC
LOC_Os02g48670
Os.6386.1.S1_at--706--3471Chr02:29793784..29793808 (25 bp)
CAGGTCCCTTGCAGTTTTCCATTTT
LOC_Os02g48670
Os.6386.1.S1_at--995--3111Chr02:29793702..29793726 (25 bp)
AATTTCTTCTTGACCGTGGAACCAT
LOC_Os02g48670
Os.6386.1.S1_at--1011--691Chr02:29793679..29793703 (25 bp)
ATGTTAACCCCAATTTGTGCCTGTT
LOC_Os02g48670
Os.6386.1.S1_at--283--7291Chr02:29793663..29793687 (25 bp)
GTGCCTGTTCTTGTTAAGCATATTC
LOC_Os02g48670
Os.6386.1.S1_at--996--31Chr02:29793611..29793635 (25 bp)
ATTGTGCTGATTTGACGAATTCGTT
NONE
Target Sequence 
GCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGA
GATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCT
GCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGC
TCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAAT
GATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCA
ATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGACGAATTCGT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis