Browse Element(s) Details


Os.64.1.S1_at

Description gb:AK067133.1
DB_XREF= gi:32977151
TID=Os.64.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.64 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094I21, full insert sequence.
FL= gb:AK067133.1 gb:AK061932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1493210/11NAK-like ser/thr protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.64.1.S1_at--597--2131Chr01:8364253..8364277 (25 bp)
ACAGTGGTGGTTTGTGAAGCTGTTT
LOC_Os01g14932
Os.64.1.S1_at--460--2691Chr01:8364237..8364261 (25 bp)
AAGCTGTTTTGGGTAGAGCCTCAGA
LOC_Os01g14932
Os.64.1.S1_at--663--6791Chr01:8364232..8364256 (25 bp)
GTTTTGGGTAGAGCCTCAGAGTCTC
LOC_Os01g14932
Os.64.1.S1_at--1049--5611Chr01:8364155..8364179 (25 bp)
GAGGTAAATCCTGTAAATTCCATTT
LOC_Os01g14932
Os.64.1.S1_at--513--10671Chr01:8364138..8364162 (25 bp)
TTCCATTTTTATTCACCACCTGCGA
LOC_Os01g14932
Os.64.1.S1_at--362--10411Chr01:8364130..8364154 (25 bp)
TTATTCACCACCTGCGAAAGACCAA
LOC_Os01g14932
Os.64.1.S1_at--875--3351Chr01:8364122..8364146 (25 bp)
CACCTGCGAAAGACCAAATTGTTAC
LOC_Os01g14932
Os.64.1.S1_at--1049--6751Chr01:8364102..8364126 (25 bp)
GTTACAAGAACATTCGGTGGCTTTG
LOC_Os01g14932
Os.64.1.S1_at--954--3591Chr01:8364092..8364116 (25 bp)
CATTCGGTGGCTTTGTATGATGGAA
LOC_Os01g14932
Os.64.1.S1_at--557--6691Chr01:8364059..8364083 (25 bp)
GTTCCAAGTTCTTTTTTGCTCCTAT
LOC_Os01g14932
Os.64.1.S1_at--1096--7751Chr01:8363991..8364015 (25 bp)
GGTGATGTGGTTGTATTCTTCAGTG
NONE
Target Sequence 
ACAGTGGTGGTTTGTGAAGCTGTTTTGGGTAGAGCCTCAGAGTCTCTGACCACCCATTTGAAGGCTGGTGGTGCAAGTGA
CCTAACCAGTTTTATTGGGAGGTAAATCCTGTAAATTCCATTTTTATTCACCACCTGCGAAAGACCAAATTGTTACAAGA
ACATTCGGTGGCTTTGTATGATGGAAATGATTTTGTTCCAAGTTCTTTTTTGCTCCTATANNNNNNNNNNNNNNNNNNNT
ATGGATCATAGACATTTAATTAGGTGATGTGGTTGTATTCTTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.64.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis