Browse Element(s) Details


Os.6440.1.S1_at

Description gb:AK059542.1
DB_XREF= gi:32969560
TID=Os.6440.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E12, full insert sequence.
FL= gb:AK059542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2940011/11Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g029101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29430OsAffx.7693.1.S1_x_at1/112+17477770..17478036hypothetical protein
LOC_Os02g29440OsAffx.12273.1.S1_at10/112+17479048..17479951hypothetical protein
LOC_Os02g29450NANA2+17482176..17482637hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005742cellular_componentmitochondrial outer membrane translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6440.1.S1_at--570--9091Chr02:17458509..17458533 (25 bp)
TGCTGCCTACCTATGTCGTCGTCGT
LOC_Os02g29400
Os.6440.1.S1_at--214--10571Chr02:17458558..17458582 (25 bp)
TTCTTCTTCTCTTAGTGTACACTGC
LOC_Os02g29400
Os.6440.1.S1_at--642--4751Chr02:17458581..17458605 (25 bp)
GCTGCTACTAGTGTTTTTGCCTGTC
LOC_Os02g29400
Os.6440.1.S1_at--861--6811Chr02:17458593..17458617 (25 bp)
GTTTTTGCCTGTCTAGTCGGACAAA
LOC_Os02g29400
Os.6440.1.S1_at--129--851Chr02:17458607..17458631 (25 bp)
AGTCGGACAAATCAAAACTTTCTTG
LOC_Os02g29400
Os.6440.1.S1_at--140--2052Chr02:17458623..17458647 (25 bp)
ACTTTCTTGTTTTCATCATCGATCT
LOC_Os02g29400
Os.6440.1.S1_at--489--511Chr02:17458640..17458664 (25 bp)
ATCGATCTATGCTATGCTGCTCTGA
LOC_Os02g29400
Os.6440.1.S1_at--446--4772Chr02:17458655..17458679 (25 bp)
GCTGCTCTGATGAGATGTCGCTTTT
LOC_Os02g29400
Os.6440.1.S1_at--835--8891Chr02:17458665..17458689 (25 bp)
TGAGATGTCGCTTTTTCTTTCCTGC
LOC_Os02g29400
Os.6440.1.S1_at--945--10291Chr02:17458682..17458706 (25 bp)
TTTCCTGCTGCTACTTTATTTTCAC
LOC_Os02g29400
Os.6440.1.S1_at--375--2051Chr02:17458694..17458718 (25 bp)
ACTTTATTTTCACGCTCATCTTATC
LOC_Os02g29400
Target Sequence 
TGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTAC
TAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAG
ATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis