Browse Element(s) Details


Os.6664.1.S1_at

Description gb:AK062463.1
DB_XREF= gi:32972481
TID=Os.6664.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.6664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D11, full insert sequence.
FL= gb:AK062463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4770011/11nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47670Os.20644.1.S1_at11/115+27234153..27237274Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47680NANA5+27237302..27239600hypothetical protein
LOC_Os05g47690NANA5+27240420..27241809Reticulon family protein, expressed
LOC_Os05g47700Os.6664.1.S1_at11/115+27247373..27248076nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class
LOC_Os05g47720Os.35344.3.S1_x_at10/115+27256760..27259473hypothetical protein
LOC_Os05g47720Os.35344.18.S1_x_at9/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.2.S1_s_at6/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.3.S1_x_at5/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.5.S1_x_at4/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.32051.1.S1_x_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.1.S1_s_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47730Os.6274.1.S1_at4/115+27262527..27262817nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47740OsAffx.19542.3.S1_x_at7/115+27264843..27269065retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6664.1.S1_at--616--9531Chr05:27247513..27247537 (25 bp)
TCTAAGTTCTTAATTTCGATCGCGA
LOC_Os05g47700
Os.6664.1.S1_at--810--191Chr05:27247525..27247549 (25 bp)
ATTTCGATCGCGAAGGGCCATGGCG
LOC_Os05g47700
Os.6664.1.S1_at--1153--351Chr05:27247838..27247862 (25 bp)
ATAATACTCCAGTTCTGCGTGCCGT
LOC_Os05g47700
Os.6664.1.S1_at--570--9491Chr05:27247851..27247875 (25 bp)
TCTGCGTGCCGTTTATACGTGTGTG
LOC_Os05g47700
Os.6664.1.S1_at--1049--311Chr05:27247865..27247889 (25 bp)
ATACGTGTGTGAGTGCGCCTGTCGC
LOC_Os05g47700
Os.6664.1.S1_at--814--291Chr05:27247904..27247928 (25 bp)
ATAGACGCCGTCTATATATGGACGT
LOC_Os05g47700
Os.6664.1.S1_at--544--10091Chr05:27247920..27247944 (25 bp)
TATGGACGTACGTACGTGTCTCGCT
LOC_Os05g47700
Os.6664.1.S1_at--1039--6991Chr05:27247931..27247955 (25 bp)
GTACGTGTCTCGCTTACTTGATTTC
LOC_Os05g47700
Os.6664.1.S1_at--410--9891Chr05:27247945..27247969 (25 bp)
TACTTGATTTCGTGTCTGCTTCGAC
LOC_Os05g47700
Os.6664.1.S1_at--966--10611Chr05:27247973..27247997 (25 bp)
TTCGATCGTGCCGTGTATTGCGTAC
LOC_Os05g47700
Os.6664.1.S1_at--705--3831Chr05:27248005..27248029 (25 bp)
CTGCTCTGTATTGGGTATGTATGTA
LOC_Os05g47700
Target Sequence 
TCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGC
TCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGG
AACGCGTCGCCGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAA
CCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACN
AAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCC
GTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTG
CGTACGGTTATNCTGCTCTGTATTGGGTATGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis