Browse Element(s) Details


Os.7080.1.S1_at

Description gb:AK068717.1
DB_XREF= gi:32978734
TID=Os.7080.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163H12, full insert sequence.
FL= gb:AK099970.1 gb:AK068717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5183010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51790Os.11933.1.S1_at11/113+29655593..29657752expressed protein
LOC_Os03g51800OsAffx.20729.1.S1_x_at1/113+29658677..29661637retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.1.S1_x_at2/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.2.S1_x_at1/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22063.1.S1_at1/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51820NANA3+29667635..29672446pentatricopeptide, putative
LOC_Os03g51830Os.7080.1.S1_at10/113+29674844..29680460DnaJ domain containing protein, expressed
LOC_Os03g51840OsAffx.25681.1.S1_at11/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51840OsAffx.26085.1.S1_x_at1/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51850Os.40855.5.S1_x_at10/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_at9/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_x_at6/113+29686219..29688991hypothetical protein
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7080.1.S1_at--280--391Chr03:29677819..29677843 (25 bp)
ATCACTATACAGTCCTTGGTCTCAA
LOC_Os03g51830
Os.7080.1.S1_at--766--10531NONE
TTGGTCTCAATAGGTCACGGACAAC
NONE
Os.7080.1.S1_at--588--8011Chr03:29679854..29679878 (25 bp)
GGAGGTTCACCCTGATCAAAATCAA
LOC_Os03g51830
Os.7080.1.S1_at--957--6951Chr03:29680078..29680102 (25 bp)
GTAGCTTCACTGGAGCTCATTGGGA
LOC_Os03g51830
Os.7080.1.S1_at--483--5371Chr03:29680120..29680144 (25 bp)
GAAGACAGTATCAGCAGGCCTTGCA
LOC_Os03g51830
Os.7080.1.S1_at--618--471Chr03:29680157..29680181 (25 bp)
ATCTGTTAGGTTCGGCTGTATCTGT
LOC_Os03g51830
Os.7080.1.S1_at--92--6911Chr03:29680174..29680198 (25 bp)
GTATCTGTTGATAGCCTGTAAGCAC
LOC_Os03g51830
Os.7080.1.S1_at--495--1491Chr03:29680230..29680254 (25 bp)
AGCACACGGCCCTGATGTAGACTAG
LOC_Os03g51830
Os.7080.1.S1_at--909--5591Chr03:29680280..29680304 (25 bp)
GAAATTGCTCATTTGTGCTTAGCCA
LOC_Os03g51830
Os.7080.1.S1_at--554--4671Chr03:29680331..29680355 (25 bp)
GCGGGTGAGCATTTTTGTTGTGTAC
LOC_Os03g51830
Os.7080.1.S1_at--1012--8811Chr03:29680346..29680370 (25 bp)
TGTTGTGTACACCTGCTGGTTTATT
LOC_Os03g51830
Target Sequence 
ATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACA
AAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATC
ATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAG
ATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGA
TAGCCTGTAAGCACAAGTTTTTATTTGCGAGTTTTTTTTTTTTGGGAGCACACGGCCCTGATGTAGACTAGGATATTGTC
GACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATT
TTTGTTGTGTACACCTGCTGGTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis