Browse Element(s) Details


Os.7147.1.S1_at

Description gb:CB096770
DB_XREF= gi:27920962
DB_XREF=AF53-RRpf_08_I18_T7_069.ab1
CLONE=C0002898
TID=Os.7147.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.24 (OJ1714_H10.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g066707/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7147.1.S1_at--1110--3731Chr07:3253249..3253273 (25 bp)
CTCAAGCTCGCCTATGTTACTGGAT
LOC_Os07g06670
Os.7147.1.S1_at--685--6751Chr07:3253264..3253288 (25 bp)
GTTACTGGATTTTACGGCATGAAAG
LOC_Os07g06670
Os.7147.1.S1_at--961--1271Chr07:3253287..3253311 (25 bp)
AGATCAGTTGGAGCTTTTACGCCAT
LOC_Os07g06670
Os.7147.1.S1_at--491--5911Chr07:3253297..3253321 (25 bp)
GAGCTTTTACGCCATATCCTAATAA
LOC_Os07g06670
Os.7147.1.S1_at--263--1271Chr07:3253346..3253370 (25 bp)
AGATAGATCCAAGGCCGGTTGTCGC
LOC_Os07g06670
Os.7147.1.S1_at--416--6691Chr07:3253372..3253396 (25 bp)
GTTCCCCATGGAACGGTGATGTTAT
LOC_Os07g06670
Os.7147.1.S1_at--1107--3612Chr07:3253474..3253498 (25 bp)
CTTGATGTTCATGAAATCCTGCTTG
LOC_Os07g06670
Os.7147.1.S1_at--310--4871Chr07:3253561..3253585 (25 bp)
GCTATGCTAAGCTATTTCTGATCAT
NONE
Os.7147.1.S1_at--188--8851Chr07:3253579..3253603 (25 bp)
TGATCATATCATCTGCAACCCTTTT
NONE
Os.7147.1.S1_at--726--5131Chr07:3253593..3253617 (25 bp)
GCAACCCTTTTCAAGAACACAGTCA
NONE
Os.7147.1.S1_at--969--2011Chr07:3253714..3253738 (25 bp)
ACTACTGTAATAACGTTTCTGGATA
NONE
Target Sequence 
CTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGT
CATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGC
TTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCNCCGCAATGTTCTTGATGTTCATGAA
ATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCT
AAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGT
CAATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACG
TTTCTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis