Browse Element(s) Details


Os.7230.1.S1_at

Description gb:AK065213.1
DB_XREF= gi:32975231
TID=Os.7230.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7230 (NCBI UniGene Cluster)
UG_TITLE=Zeta-carotene desaturase precursor (zds) gene, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G03, full insert sequence.
FL= gb:AK066223.1 gb:AK065213.1 gb:AK062079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1049011/11Zeta-carotene desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed
LOC_Os07g10500Os.10469.1.S1_at3/117+5653417..5655273Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0016120biological_processcarotene biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016166molecular_functionphytoene dehydrogenase activity
GO:0016719molecular_functioncarotene 7,8-desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7230.1.S1_at--1078--6211Chr07:5648937..5648961 (25 bp)
GAGGCCCTTCAGACAAGCTGAGCTT
LOC_Os07g10490
Os.7230.1.S1_at--870--5911Chr07:5648956..5648980 (25 bp)
GAGCTTCCTCAAATGACACATGCTG
LOC_Os07g10490
Os.7230.1.S1_at--709--6111Chr07:5648981..5649005 (25 bp)
GAGTGAGTGGATTGCTATGCCCAAA
LOC_Os07g10490
Os.7230.1.S1_at--57--2411Chr07:5649010..5649034 (25 bp)
AAACAGCTTCCTGGGTGTAGTAGGC
LOC_Os07g10490
Os.7230.1.S1_at--932--6931Chr07:5649026..5649050 (25 bp)
GTAGTAGGCGATTTCCGCAGCGACT
LOC_Os07g10490
Os.7230.1.S1_at--680--10291Chr07:5649037..5649061 (25 bp)
TTTCCGCAGCGACTCTCATGTAAAT
LOC_Os07g10490
Os.7230.1.S1_at--689--4951Chr07:5649075..5649099 (25 bp)
GCATTTAGGTCCAATCTGCTGCTGC
LOC_Os07g10490
Os.7230.1.S1_at--91--10351Chr07:5649102..5649126 (25 bp)
TTTTTGCCTTGACACGATCGTTCGT
LOC_Os07g10490
Os.7230.1.S1_at--1091--4231Chr07:5649131..5649155 (25 bp)
CCGTCAATGGTGTGTTCTTCGTTAT
LOC_Os07g10490
Os.7230.1.S1_at--629--3551Chr07:5649198..5649222 (25 bp)
CATCAGGCAGCGTGTGTTTTGTTCA
LOC_Os07g10490
Os.7230.1.S1_at--184--6811Chr07:5649213..5649237 (25 bp)
GTTTTGTTCAGCTTAACCGATCATT
LOC_Os07g10490
Target Sequence 
GAGGCCCTTCAGACAAGCTGAGCTTCCTCAAATGACACATGCTGGAGTGAGTGGATTGCTATGCCCAAAACAAAAACAGC
TTCCTGGGTGTAGTAGGCGATTTCCGCAGCGACTCTCATGTAAATCCTACTTGATTGAGCATTTAGGTCCAATCTGCTGC
TGCCCTTTTTGCCTTGACACGATCGTTCGTTCGCCCGTCAATGGTGTGTTCTTCGTTATTGTGAATTTGTGATTGGGAAC
CAAAGGTGGCATACGGGATTACATCAGGCAGCGTGTGTTTTGTTCAGCTTAACCGATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis