Browse Element(s) Details


Os.7243.1.S1_s_at

Description gb:AK070913.1
DB_XREF= gi:32980936
TID=Os.7243.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full insert sequence.
FL= gb:AK069857.1 gb:AK070913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0625011/11GMFP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7243.1.S1_s_at--1027--10731Chr08:3438993..3439017 (25 bp)
TTGCACTTGGAGCTGTACTATTTGA
LOC_Os08g06250
Os.7243.1.S1_s_at--751--1131Chr08:3439985..3440009 (25 bp)
AGTGCTGTTCACTGTAGCTCTCATA
LOC_Os08g06250
Os.7243.1.S1_s_at--69--6971Chr08:3439998..3440022 (25 bp)
GTAGCTCTCATAGTGCAGTCAGGCA
LOC_Os08g06250
Os.7243.1.S1_s_at--963--2111Chr08:3440038..3440062 (25 bp)
ACAGTGATGACGAGTACATTGCCCC
LOC_Os08g06250
Os.7243.1.S1_s_at--71--2631Chr08:3440098..3440122 (25 bp)
AACCTGTTGCTGACCCTAGGGTGCC
LOC_Os08g06250
Os.7243.1.S1_s_at--183--10751Chr08:3440128..3440152 (25 bp)
TTGACTACCGTCCAATCCGAAACGA
LOC_Os08g06250
Os.7243.1.S1_s_at--68--7711Chr08:3440273..3440297 (25 bp)
GGGTGGACACCTTTGATCCAAACAG
LOC_Os08g06250
Os.7243.1.S1_s_at--1030--2391Chr08:3440292..3440316 (25 bp)
AAACAGGTTCCAACAGGCGACAATA
LOC_Os08g06250
Os.7243.1.S1_s_at--684--5551Chr08:3440333..3440357 (25 bp)
GAAACCGATGCGCAATCCTCTGAAA
LOC_Os08g06250
Os.7243.1.S1_s_at--287--8591Chr08:3440364..3440388 (25 bp)
TGGTATCAGTCGGTAGCGGCTCTAA
LOC_Os08g06250
Os.7243.1.S1_s_at--86--10012Chr08:3440377..3440401 (25 bp)
TAGCGGCTCTAATTTACACCCAACT
LOC_Os08g06250
Target Sequence 
TTGCACTTGGAGCTGTACTATTTGAGGCAGTGCTGTTCACTGTAGCTCTCATAGTGCAGTCAGGCAATCAAGCAGACTAT
GACAGTGATGACGAGTACATTGCCCCAAGGTCTTCAACCCGGCAGCCGTTGGTGAACAAGCAACCTGTTGCTGACCCTAG
GGTGCCCAACCTTGACTACCGTCCAATCCGAAACGATGCGTGGAGCCAAAGAATGAGAGAAAAGTATGGGGTGGACACCT
TTGATCCAAACAGGTTCCAACAGGCGACAATATCTCCCGCAGAACAAAGAAACCGATGCGCAATCCTCTGAAACTCGGTT
GGTATCAGTCGGTAGCGGCTCTAATTTACACCCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7243.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis