Browse Element(s) Details


Os.7310.1.S1_at

Description gb:AK100521.1
DB_XREF= gi:32985730
TID=Os.7310.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100L19, full insert sequence.
FL= gb:AK100521.1 gb:AK070636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2531011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25260Os.56944.1.S1_at11/115+14584695..14586586AP2 domain containing protein, expressed
LOC_Os05g25270OsAffx.14822.1.S1_at11/115+14589504..14590776hypothetical protein
LOC_Os05g25280OsAffx.31069.1.S1_x_at1/115+14596637..14599484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25290NANA5+14600556..14603169transposon protein, putative, unclassified
LOC_Os05g25300OsAffx.22850.1.S1_x_at2/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.10596.1.S1_x_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.25260.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.22850.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25340OsAffx.14823.1.S1_at11/115+14636415..14637182hypothetical protein
LOC_Os05g25350Os.50478.1.S1_at11/115+14638522..14643549Protein kinase domain containing protein, expressed
LOC_Os05g25360OsAffx.14824.1.S1_at11/115+14644792..14645392hypothetical protein
LOC_Os05g25360Os.49549.1.S1_at1/115+14644792..14645392hypothetical protein
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7310.1.S1_at--493--3491Chr05:14621568..14621592 (25 bp)
CAGGCCTTAGAGCAGTGGGCTCAAA
LOC_Os05g25310
Os.7310.1.S1_at--1058--7471Chr05:14621582..14621606 (25 bp)
GTGGGCTCAAAATTCTGGGATTAAC
LOC_Os05g25310
Os.7310.1.S1_at--530--2391Chr05:14621612..14621636 (25 bp)
AAACTTTGATGAGCTGTGCCACAAT
LOC_Os05g25310
Os.7310.1.S1_at--419--4731Chr05:14621624..14621648 (25 bp)
GCTGTGCCACAATGATCAAGCCATT
LOC_Os05g25310
Os.7310.1.S1_at--326--991Chr05:14621650..14621674 (25 bp)
AGGAGGTCCAGCAATCTCTATCAAA
LOC_Os05g25310
Os.7310.1.S1_at--880--2811Chr05:14622789..14622813 (25 bp)
AAGATTGTGTTGCTGCCTGAACCAT
LOC_Os05g25310
Os.7310.1.S1_at--625--4471Chr05:14622803..14622827 (25 bp)
GCCTGAACCATGGACTCCAGAGTCT
LOC_Os05g25310
Os.7310.1.S1_at--712--3891Chr05:14622831..14622855 (25 bp)
CTGGTGACAGCTGCACTTAAACTGA
LOC_Os05g25310
Os.7310.1.S1_at--843--191Chr05:14623090..14623114 (25 bp)
ATTTCTCCGTGCCTTGTTAGGATAA
LOC_Os05g25310
Os.7310.1.S1_at--831--4991Chr05:14623173..14623197 (25 bp)
GCATGTTCCTTTTCTTAGCTTGGGA
LOC_Os05g25310
Os.7310.1.S1_at--1009--1531Chr05:14623189..14623213 (25 bp)
AGCTTGGGATGGTTGTTTCGTACTA
LOC_Os05g25310
Target Sequence 
CAGGCCTTAGAGCAGTGGGCTCAAAATTCTGGGATTAACTACAAAAACTTTGATGAGCTGTGCCACAATGATCAAGCCAT
TAAGGAGGTCCAGCAATCTCTATCAAAGGCTGCAAAAGCAGCGAGGCTTGAGAAGTTTGAAATACCAGCAAAGATTGTGT
TGCTGCCTGAACCATGGACTCCAGAGTCTGGNCTGGTGACAGCTGCACTTAAACTGAAGAGGGAGCAGATAAAGACCNAA
TTCAAAGATGATCTGGGCAAGCTCTATCACTGAATCAGCTATGATGTCTGCTGGGGCACCATTATGGATGAAATAATCTA
TGTTCTTTTGCTATTTGTCATCCGCAAGGCTCTCTTGACGGGATGACCTGCTCACTAAATTCAGCGTGTAGTCAATACCC
CGAATGCTAGACCCGGGAAACGACTGGGACGTGGAGCAGTGTAATTATGGGATTTCTCCGTGCCTTGTTAGGATAATAAA
TTTCTCAAGACCGGNTTAACCTGCTTCTGTTCTTCTGGTTAATAATATATAGTTGCATGTTCCTTTTCTTAGCTTGGGAT
GGTTGTTTCGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis