Browse Element(s) Details


Os.7311.1.S1_at

Description gb:AK068544.1
DB_XREF= gi:32978561
TID=Os.7311.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155A22, full insert sequence.
FL= gb:AK068544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5491011/11GTP-binding protein TypA containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7311.1.S1_at--745--7871Chr01:31909770..31909794 (25 bp)
GGTTACTCCCAAGGTCATTCGGCTT
LOC_Os01g54910
Os.7311.1.S1_at--294--10471Chr01:31909772..31909796 (25 bp)
TTACTCCCAAGGTCATTCGGCTTCG
LOC_Os01g54910
Os.7311.1.S1_at--819--1791Chr01:31909774..31909798 (25 bp)
ACTCCCAAGGTCATTCGGCTTCGGA
LOC_Os01g54910
Os.7311.1.S1_at--923--4171Chr01:31909777..31909801 (25 bp)
CCCAAGGTCATTCGGCTTCGGAAGA
LOC_Os01g54910
Os.7311.1.S1_at--183--2891Chr01:31909780..31909804 (25 bp)
AAGGTCATTCGGCTTCGGAAGAAAT
LOC_Os01g54910
Os.7311.1.S1_at--1089--9371Chr01:31909788..31909812 (25 bp)
TCGGCTTCGGAAGAAATATCTGGAT
LOC_Os01g54910
Os.7311.1.S1_at--465--3951Chr01:31909795..31909819 (25 bp)
CGGAAGAAATATCTGGATGCCACGA
LOC_Os01g54910
Os.7311.1.S1_at--728--5591Chr01:31909800..31909824 (25 bp)
GAAATATCTGGATGCCACGAAACGT
LOC_Os01g54910
Os.7311.1.S1_at--619--10051Chr01:31909804..31909828 (25 bp)
TATCTGGATGCCACGAAACGTAAGA
LOC_Os01g54910
Os.7311.1.S1_at--633--7951Chr01:31909809..31909833 (25 bp)
GGATGCCACGAAACGTAAGATGATG
LOC_Os01g54910
Os.7311.1.S1_at--345--6331Chr01:31910334..31910358 (25 bp)
GATGCATGAACTAAGACAGAAGTAC
LOC_Os01g54910
Target Sequence 
GGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGG
ATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCA
TCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATNAAAATTTTA
TTCAGCCGTGGGATGATAATGNTTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAAT
ACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAAT
TGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTAGTTGAGTGCTGAAAAAATGACAGCTATAG
TCTCTNTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACG
CTANGATGCATGAACTAAGACAGAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis