Browse Element(s) Details


Os.7351.1.S1_at

Description gb:AK106759.1
DB_XREF= gi:32991968
TID=Os.7351.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D10, full insert sequence.
FL= gb:AK106759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6443011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7351.1.S1_at--1118--4271Chr01:37723416..37723440 (25 bp)
CCTGCCAGTTCTAGCCAAGTTTCAA
LOC_Os01g64430
Os.7351.1.S1_at--1161--10551Chr01:37723408..37723432 (25 bp)
TTCTAGCCAAGTTTCAACGCGACGC
LOC_Os01g64430
Os.7351.1.S1_at--287--3531Chr01:37723380..37723404 (25 bp)
CATGCACGCCATACTTCTTAATCGT
LOC_Os01g64430
Os.7351.1.S1_at--431--3651Chr01:37723364..37723388 (25 bp)
CTTAATCGTGTTAACCACTAGCTAT
LOC_Os01g64430
Os.7351.1.S1_at--434--10071Chr01:37723334..37723358 (25 bp)
TAGTGTACTTGTTACCAGCGCTATT
LOC_Os01g64430
Os.7351.1.S1_at--435--4171Chr01:37723227..37723251 (25 bp)
CCCAGCGTGATGTGGTGCATTTCCA
LOC_Os01g64430
Os.7351.1.S1_at--814--791Chr01:37723218..37723242 (25 bp)
ATGTGGTGCATTTCCAACGGTCTTC
LOC_Os01g64430
Os.7351.1.S1_at--1098--2491Chr01:37723203..37723227 (25 bp)
AACGGTCTTCGATCTGCTGAAACCA
LOC_Os01g64430
Os.7351.1.S1_at--1009--8831Chr01:37723131..37723155 (25 bp)
TGATCTGCTTGATGTAATGACACGC
LOC_Os01g64430
Os.7351.1.S1_at--546--1911Chr01:37723093..37723117 (25 bp)
ACGTGATGTGTAATGATGCGCGCGC
LOC_Os01g64430
Os.7351.1.S1_at--804--4551Chr01:37723065..37723089 (25 bp)
GCGCCGTGGTGGTGTAATCATATAC
LOC_Os01g64430
Target Sequence 
CCTGCCAGTTCTAGCCAAGTTTCAACGCGACGCCACCATGCACGCCATACTTCTTAATCGTGTTAACCACTAGCTATATT
ACTAGTGTACTTGTTACCAGCGCTATTNATAGCGTGTCTGTCGCCTCAGNTTGTTAACTATCTACATGGTNTACGTAGTT
CATGGTTGGGAGAGGTTATTAACAGAGANCCCAGCGTGATGTGGTGCATTTCCAACGGTCTTCGATCTGCTGAAACCANN
GCACNAAGACCGTGCAANATGCNCCATTAATTAGCTCCAGCNGCTTGATCTGCTTGATGTAATGACACGCNATATGCCCA
TGNACGTGATGTGTAATGATGCGCGCGCGTGGCGCCGTGGTGGTGTAATCATATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis