Browse Element(s) Details

Os.7390.1.S1_at

Description

gb:AK070147.1
DB_XREF= gi:32980171
TID=Os.7390.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041F14, full insert sequence.
FL= gb:AK070147.1 gb:AK122135.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01410	10/11	glutamine cyclotransferase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01370	Os.14023.2.S1_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.2.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_at	10/11	6	+	218460..220117	expressed protein
LOC_Os06g01390	Os.9192.1.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_x_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	OsAffx.28164.2.S1_at	1/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400	Os.52272.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_s_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410	Os.7390.1.S1_at	10/11	6	+	243855..246786	glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420	NA	NA	6	+	250421..256376	retrotransposon protein, putative, unclassified
LOC_Os06g01430	NA	NA	6	+	257208..260132	retrotransposon protein, putative, unclassified
LOC_Os06g01440	Os.20250.1.S1_at	10/11	6	+	265683..271411	Integral membrane protein, expressed
LOC_Os06g01450	OsAffx.15214.1.S1_x_at	11/11	6	+	270281..274436	dehydration-responsive family protein, putative, expressed
LOC_Os06g01450	Os.49839.1.S1_at	11/11	6	+	270281..274436	dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7390.1.S1_at--142--533	1	Chr06:244867..244891 (25 bp)	GAAGTCCCCTATCTTAATGAACTGG	LOC_Os06g01410
Os.7390.1.S1_at--708--213	1	Chr06:244667..244691 (25 bp)	ACAGATTGCATAGCTAGAGTCTCCC	LOC_Os06g01410
Os.7390.1.S1_at--63--611	1	Chr06:244651..244675 (25 bp)	GAGTCTCCCATGAAGATGGCCTAGT	LOC_Os06g01410
Os.7390.1.S1_at--460--369	1	Chr06:244631..244655 (25 bp)	CTAGTGGTGGGCTGGATCTTTCTTC	LOC_Os06g01410
Os.7390.1.S1_at--918--641	1	NONE	GATCTTTCTTCATGAGCTGAGGCAA	NONE
Os.7390.1.S1_at--262--515	1	Chr06:244503..244527 (25 bp)	GCAACACTTGTGGAATTCTGGCAAT	LOC_Os06g01410
Os.7390.1.S1_at--310--641	1	Chr06:244087..244111 (25 bp)	GATCTGTAGAGAAGCTATGCCCCAA	LOC_Os06g01410
Os.7390.1.S1_at--1008--915	1	Chr06:244070..244094 (25 bp)	TGCCCCAAGGCAAGCTTTTATCGTT	LOC_Os06g01410
Os.7390.1.S1_at--771--687	1	Chr06:243948..243972 (25 bp)	GTATTGCATACACCTCTTAAGTGGA	LOC_Os06g01410
Os.7390.1.S1_at--780--5	1	Chr06:243919..243943 (25 bp)	ATTGATTGGCAGTTTTCGGAGACTT	LOC_Os06g01410
Os.7390.1.S1_at--120--599	1	Chr06:243901..243925 (25 bp)	GAGACTTGTGTTGTATCTCGACAAA	LOC_Os06g01410

Target Sequence

GAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAGACAGATTGCATAGCTAG
AGTCTCCCATGAAGATGGCCTAGTGGTGGGCTGGATCTTTCTTCATGAGCTGAGGCAACACTTGTGGAATTCTGGCAATA
CGGAAATCGATGTTCTAAATGGTATAGCTTGGGATGAAGAAAATCAAAGATTATTTGTGACCGGAAAATTGTGGCCAAAG
ATCTATGAAATTAAGCTACGGCCTGTAGATGGGCCACAAGATGGATCTGTAGAGAAGCTATGCCCCAAGGCAAGCTTTTA
TCGTTGAGGTGTAGTGGATCTCTCTAGGGTGAGAAGAGAAGAGAAGAGAAGAGAAGATATAGNATATCTTGTTTTTATAT
CAGTATGTTACAATGCACAGATGTATTGCATACACCTCTTAAGTGGAGGTAATTGATTGGCAGTTTTCGGAGACTTGTGT
TGTATCTCGACAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis