Browse Element(s) Details

Os.7419.1.S1_a_at

Description

gb:AB081951.1
DB_XREF= gi:21280322
GEN=OsAGO1
TID=Os.7419.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7419 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1 homologous protein, complete cds.
PROD=AGO1 homologous protein
FL= gb:AB081951.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g58490	11/11	PINHEAD protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g58430	OsAffx.13097.1.S1_s_at	11/11	2	+	35726314..35731898	transposon protein, putative, Mutator sub-class
LOC_Os02g58440	Os.27604.1.S1_at	11/11	2	+	35733119..35737451	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450	Os.33786.1.S1_at	11/11	2	+	35734968..35738793	Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450	Os.17160.1.S1_s_at	3/11	2	+	35734968..35738793	Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450	OsAffx.13616.1.S1_x_at	3/11	2	+	35734968..35738793	Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460	Os.10719.1.S1_at	11/11	2	+	35741366..35745423	Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470	Os.40059.1.S1_at	11/11	2	+	35745597..35747736	expressed protein
LOC_Os02g58480	Os.52194.1.S1_at	11/11	2	+	35749077..35755347	Sucrose synthase 2, putative, expressed
LOC_Os02g58480	Os.51168.1.S1_at	11/11	2	+	35749077..35755347	Sucrose synthase 2, putative, expressed
LOC_Os02g58490	Os.7419.1.S1_a_at	11/11	2	+	35755309..35762519	PINHEAD protein, putative, expressed
LOC_Os02g58500	Os.4603.1.S1_at	11/11	2	+	35764745..35766255	phospholipase A2, putative, expressed
LOC_Os02g58510	Os.27193.1.S1_at	11/11	2	+	35766329..35768918	homoserine kinase family protein, expressed
LOC_Os02g58520	Os.24128.1.A1_at	11/11	2	+	35769161..35771397	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530	OsAffx.3105.1.S1_at	11/11	2	+	35773561..35775519	major facilitator superfamily protein, expressed
LOC_Os02g58540	OsAffx.24924.1.S1_at	11/11	2	+	35777415..35778267	Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550	Os.47401.1.A1_s_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550	Os.18407.1.S1_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S2_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.17864.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_s_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0009965	biological_process	leaf morphogenesis
GO:0016441	biological_process	posttranscriptional gene silencing
GO:0035195	biological_process	miRNA-mediated gene silencing
GO:0005737	cellular_component	cytoplasm
GO:0003743	molecular_function	translation initiation factor activity
GO:0004521	molecular_function	endoribonuclease activity
GO:0035197	molecular_function	siRNA binding
GO:0035198	molecular_function	miRNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7419.1.S1_a_at--935--365	1	Chr02:35756151..35756175 (25 bp)	CTTCACAGCTGATGCATTGCAGATT	LOC_Os02g58490
Os.7419.1.S1_a_at--925--651	1	Chr02:35756130..35756154 (25 bp)	GATTCTTACCAACAACCTTTGCTAC	LOC_Os02g58490
Os.7419.1.S1_a_at--139--877	1	Chr02:35755915..35756025 (25 bp)	TGTATCAATTGTTCCACCTGCTTAT	LOC_Os02g58490
Os.7419.1.S1_a_at--509--425	1	Chr02:35755870..35755894 (25 bp)	CCGTGCTCGTTTCTATATGGAACCA	LOC_Os02g58490
Os.7419.1.S1_a_at--294--215	1	Chr02:35755835..35755859 (25 bp)	ACAGCAGCTCTGTCGTTAGTGGGCC	LOC_Os02g58490
Os.7419.1.S1_a_at--632--861	1	Chr02:35755756..35755780 (25 bp)	TGGTGCAGCTGTTAAGCCACTTCCT	LOC_Os02g58490
Os.7419.1.S1_a_at--1046--991	1	Chr02:35755698..35755722 (25 bp)	TACTGCTGAAGCTAGGGCCTACATA	LOC_Os02g58490
Os.7419.1.S1_a_at--852--483	1	Chr02:35755673..35755697 (25 bp)	GCTAAAGCTCTTCGTTTCTTGGCAA	LOC_Os02g58490
Os.7419.1.S1_a_at--698--1039	1	Chr02:35755658..35755682 (25 bp)	TTCTTGGCAACCTGCCTATGATGGT	LOC_Os02g58490
Os.7419.1.S1_a_at--476--875	1	Chr02:35755578..35755602 (25 bp)	TGTACTATGCTGGTCATGTTTGCCA	LOC_Os02g58490
Os.7419.1.S1_a_at--1029--73	1	Chr02:35755563..35755587 (25 bp)	ATGTTTGCCAAAGTTACCCTATATG	LOC_Os02g58490

Target Sequence

CTTCACAGCTGATGCATTGCAGATTCTTACCAACAACCTTTGCTACACCTATGCAAGGTGCACTCGCTCTGTATCAATTG
TTCCACCTGCTTATTATGCTCATCTGGCTGCCTTCCGTGCTCGTTTCTATATGGAACCAGATACATCTGACAGCAGCTCT
GTCGTTAGTGGGCCTGGTGTACGTGGGCCACTTTCTGGCTCATCAACATCACGTACTCGGGCCCCTGGTGGTGCAGCTGT
TAAGCCACTTCCTGCTCTGAAGGATAGTGTGAAGAGGGTCATGTTCTACTGCTGAAGCTAGGGCCTACATAGCTAAAGCT
CTTCGTTTCTTGGCAACCTGCCTATGATGGTTGTAATTATGTGTCAAAAAATCCCATAATAATCTGCCAGCTGCTATCTT
CTCCATTGTACTATGCTGGTCATGTTTGCCAAAGTTACCCTATATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis