Browse Element(s) Details


Os.7590.1.S1_at

Description gb:NM_189417.1
DB_XREF= gi:34905917
GEN=P0458E05.35
TID=Os.7590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.35 (P0458E05.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0458E05.35 (P0458E05.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7364410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7590.1.S1_at--937--8451Chr01:42993003..42993027 (25 bp)
TGGCCAGGTCCCCAAAGTACCTATT
LOC_Os01g73644
Os.7590.1.S1_at--51--9931Chr01:42992986..42993010 (25 bp)
TACCTATTTTTACCACCTTGCAATG
LOC_Os01g73644
Os.7590.1.S1_at--1049--5171NONE
GCAATGCAAATTTTCTCCAAATGTT
NONE
Os.7590.1.S1_at--460--8691Chr01:42992923..42992947 (25 bp)
TGTGCAAATTTGTGGTGTTCTCTAT
LOC_Os01g73644
Os.7590.1.S1_at--1030--8791Chr01:42992908..42992932 (25 bp)
TGTTCTCTATTTTGTCACAGCCTGA
LOC_Os01g73644
Os.7590.1.S1_at--492--7091Chr01:42992898..42992919 (22 bp)
GTCACAGCCTGACAGCAAGCTGAAT
LOC_Os01g73644
Os.7590.1.S1_at--1066--5151Chr01:42992683..42992905 (25 bp)
GCAAGCTGAATCCTGGTAAATCTTC
LOC_Os01g73644
Os.7590.1.S1_at--814--431Chr01:42990729..42990750 (22 bp)
ATCTTCCATGTACTATGCAGGTCCA
LOC_Os01g73644
Os.7590.1.S1_at--798--2771Chr01:42990451..42990475 (25 bp)
AAGAGCCAGTTGATATCCGTGCGAC
LOC_Os01g73644
Os.7590.1.S1_at--328--6511Chr01:42990440..42990464 (25 bp)
GATATCCGTGCGACTATTCCCAGAG
LOC_Os01g73644
Os.7590.1.S1_at--200--8351Chr01:42990412..42990436 (25 bp)
GGCTGGCTGGACAAGGAGCTCCCAC
LOC_Os01g73644
Target Sequence 
TGGCCAGGTCCCCAAAGTACCTATTTTTACCACCTTGCAATGCAAATTTTCTCCAAATGTTTTTTCTATGCAAACTGTGC
AAATTTGTGGTGTTCTCTATTTTGTCACAGCCTGACAGCAAGCTGAATCCTGGTAAATCTTCAGTGTTGGATAGTGTGGT
GGGGATGGATTTCTTACTAAGTGATTCAGGTGGAAATGTAGGTGCTGATGGAAAAACAAGGTACATGGTGCTGATGGAAA
AGATCGTGTGGTCACATTTGATGGGAAATATCTTCCATGTACTATGCAGGTCCATGTTGTTGGAGAAGAGCCAGTTGATA
TCCGTGCGACTATTCCCAGAGCCCGGCTGGCTGGACAAGGAGCTCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis