Browse Element(s) Details


Os.7601.1.S1_s_at

Description gb:AU197913
DB_XREF= gi:14713968
DB_XREF=AU197913
CLONE=S12692
TID=Os.7601.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7601 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4335011/11NC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7601.1.S1_s_at--354--4271Chr08:27260808..27260832 (25 bp)
CCTGTCGGCGCATCTTGGCTGGCGT
LOC_Os08g43350
Os.7601.1.S1_s_at--399--431Chr08:27260797..27260821 (25 bp)
ATCTTGGCTGGCGTCGCGCCAAAGC
LOC_Os08g43350
Os.7601.1.S1_s_at--1001--8431Chr08:27260760..27260784 (25 bp)
GGCCATGAAAAAACAGCAGCCTTCA
LOC_Os08g43350
Os.7601.1.S1_s_at--958--9031Chr08:27260675..27260699 (25 bp)
TGCGAAATTATTACGAGCTGAAATT
LOC_Os08g43350
Os.7601.1.S1_s_at--378--10411Chr08:27260632..27260656 (25 bp)
TTTTGTGTGGATAGGTTTTGGAGTT
LOC_Os08g43350
Os.7601.1.S1_s_at--296--5911Chr08:27260612..27260636 (25 bp)
GAGTTAAAATGCAATAAGTCCTGGA
LOC_Os08g43350
Os.7601.1.S1_s_at--169--5591Chr08:27260589..27260613 (25 bp)
GAAATATATGAAGCGTCAAGTGTGC
LOC_Os08g43350
Os.7601.1.S1_s_at--375--4651Chr08:27260577..27260601 (25 bp)
GCGTCAAGTGTGCTTTGATTTAATC
LOC_Os08g43350
Os.7601.1.S1_s_at--820--371Chr08:27260555..27260579 (25 bp)
ATCAAGCATTCGCTGTCTCTGTGTG
LOC_Os08g43350
Os.7601.1.S1_s_at--76--3251Chr08:27260553..27260577 (25 bp)
CAAGCATTCGCTGTCTCTGTGTGTG
LOC_Os08g43350
Os.7601.1.S1_s_at--741--511Chr08:27260516..27260540 (25 bp)
ATCGATCTGATCATGAATTGGGTGT
LOC_Os08g43350
Target Sequence 
CCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATG
ATACTNAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTNT
ACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGT
GTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7601.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis