Browse Element(s) Details


Os.7707.1.S1_at

Description gb:AK062025.1
DB_XREF= gi:32972043
TID=Os.7707.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G04, full insert sequence.
FL= gb:AK062025.1 gb:AK098916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5432011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7707.1.S1_at--771--971Chr04:32120057..32120081 (25 bp)
AGGAGCTCAACGCAGGCCTTGTTTG
LOC_Os04g54320
Os.7707.1.S1_at--251--4451Chr04:32120072..32120096 (25 bp)
GCCTTGTTTGCGACTGGTTCGTCAA
LOC_Os04g54320
Os.7707.1.S1_at--1136--1431Chr04:32120117..32120141 (25 bp)
AGAACGTGGGCTCAGCTGTCCTGCA
LOC_Os04g54320
Os.7707.1.S1_at--265--1091Chr04:32120141..32120165 (25 bp)
AGTGGGACGACCCTGGTTTCTAGCT
LOC_Os04g54320
Os.7707.1.S1_at--599--7151Chr04:32120211..32120235 (25 bp)
GTCTCCACCGAGAAACAGGGTTCAT
LOC_Os04g54320
Os.7707.1.S1_at--273--5911Chr04:32120262..32120286 (25 bp)
GAGCTCACTGATCACTTTCTTTGAA
LOC_Os04g54320
Os.7707.1.S1_at--441--2791Chr04:32120290..32120314 (25 bp)
AAGAGGGTTCCTTTGTCTTGCGACA
LOC_Os04g54320
Os.7707.1.S1_at--74--10711Chr04:32120307..32120331 (25 bp)
TTGCGACACTCGTTGTGCCTAATTG
LOC_Os04g54320
Os.7707.1.S1_at--1018--4451Chr04:32120323..32120347 (25 bp)
GCCTAATTGGGCTTTTTACATGTCA
LOC_Os04g54320
Os.7707.1.S1_at--326--7031Chr04:32120348..32120372 (25 bp)
GTACATGACGACCTGTATCACTTCC
LOC_Os04g54320
Os.7707.1.S1_at--1021--371Chr04:32120364..32120388 (25 bp)
ATCACTTCCTTTGTATGCCAGAGAC
LOC_Os04g54320
Target Sequence 
AGGAGCTCAACGCAGGCCTTGTTTGCGACTGGTTCGTCAAGGACAAGCTCAAGAGGGAGCAGAACGTGGGCTCAGCTGTC
CTGCAGTGGGACGACCCTGGTTTCTAGCTCCATCATCCGTTTATGGATGATGGTGATTTGGTGGTCTTGCCGGCGTCTCC
ACCGAGAAACAGGGTTCATCAAGTCAACATTTTTCTCGGTTGATAGAGCTCACTGATCACTTTCTTTGAATTAAAGAGGG
TTCCTTTGTCTTGCGACACTCGTTGTGCCTAATTGGGCTTTTTACATGTCAGTACATGACGACCTGTATCACTTCCTTTG
TATGCCAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis