Browse Element(s) Details


Os.7722.1.S1_at

Description gb:AK108461.1
DB_XREF= gi:32993670
TID=Os.7722.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D08, full insert sequence.
FL= gb:AK108461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4303011/11CG-1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7722.1.S1_at--959--4171Chr07:25774632..25774656 (25 bp)
CCCACCATTTTGTGACATTGAGGAG
LOC_Os07g43030
Os.7722.1.S1_at--899--5671Chr07:25774619..25774643 (25 bp)
GACATTGAGGAGTTTTACTAGATCA
LOC_Os07g43030
Os.7722.1.S1_at--914--2011Chr07:25774603..25774627 (25 bp)
ACTAGATCAGTTAGGCTGCGACCTC
LOC_Os07g43030
Os.7722.1.S1_at--15--10451Chr07:25774593..25774617 (25 bp)
TTAGGCTGCGACCTCTGTTCTTTAC
LOC_Os07g43030
Os.7722.1.S1_at--1009--3851Chr07:25774579..25774603 (25 bp)
CTGTTCTTTACCAGGCTAGCTGTAA
LOC_Os07g43030
Os.7722.1.S1_at--464--10131Chr07:25774573..25774597 (25 bp)
TTTACCAGGCTAGCTGTAAATTCTT
LOC_Os07g43030
Os.7722.1.S1_at--613--3151Chr07:25774555..25774579 (25 bp)
AATTCTTGTGCTAGATGTTCAGTGC
LOC_Os07g43030
Os.7722.1.S1_at--421--1311Chr07:25774543..25774567 (25 bp)
AGATGTTCAGTGCTCACCGTTCGAC
LOC_Os07g43030
Os.7722.1.S1_at--1147--7311Chr07:25774534..25774558 (25 bp)
GTGCTCACCGTTCGACTCTATATAG
LOC_Os07g43030
Os.7722.1.S1_at--1035--10331Chr07:25774507..25774531 (25 bp)
TTATACCTAATACCATGCGACTTCT
LOC_Os07g43030
Os.7722.1.S1_at--177--9971Chr07:25774504..25774528 (25 bp)
TACCTAATACCATGCGACTTCTATT
LOC_Os07g43030
Target Sequence 
CCCACCATTTTGTGACATTGAGGAGTTTTACTAGATCAGTTAGGCTGCGACCTCTGTTCTTTACCAGGCTAGCTGTAAAT
TCTTGTGCTAGATGTTCAGTGCTCACCGTTCGACTCTATATAGCNTTATACCTAATACCATGCGACTTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis