Browse Element(s) Details


Os.7731.1.S1_at

Description gb:AK068075.1
DB_XREF= gi:32978093
TID=Os.7731.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.13 (OSJNBa0038J17.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134A03, full insert sequence.
FL= gb:AK068075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1152011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11470NANA1+6178965..6179318hypothetical protein
LOC_Os01g11480OsAffx.1984.1.S1_at11/111+6179927..6180666Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7731.1.S1_at--462--1991Chr01:6196510..6196534 (25 bp)
ACTGCGCCGTGTGTCTGTCGGAGCT
LOC_Os01g11520
Os.7731.1.S1_at--290--3211Chr01:6196189..6196213 (25 bp)
CAAGGAATTGAGGATCGACGATGAC
LOC_Os01g11520
Os.7731.1.S1_at--877--4051Chr01:6196171..6196195 (25 bp)
CGATGACGACGAACTTCAGAGTTGT
LOC_Os01g11520
Os.7731.1.S1_at--196--2051Chr01:6196159..6196183 (25 bp)
ACTTCAGAGTTGTGATGTGATTCTT
LOC_Os01g11520
Os.7731.1.S1_at--720--6571Chr01:6196141..6196165 (25 bp)
GATTCTTTATTTTGCTATAGGAGCT
LOC_Os01g11520
Os.7731.1.S1_at--1000--271Chr01:6196125..6196149 (25 bp)
ATAGGAGCTCTATCAAGTGTAGATT
LOC_Os01g11520
Os.7731.1.S1_at--142--5551Chr01:6196098..6196122 (25 bp)
GAAACGCATTTGTGATGTGATTCTT
LOC_Os01g11520
Os.7731.1.S1_at--568--7411Chr01:6196082..6196106 (25 bp)
GTGATTCTTTATTTCTTTCCCATAT
LOC_Os01g11520
Os.7731.1.S1_at--479--2551Chr01:6196044..6196068 (25 bp)
AACTGCATAATACATTCCCCGCAAA
LOC_Os01g11520
Os.7731.1.S1_at--943--5111Chr01:6196009..6196033 (25 bp)
GCAAAAGTAAAGTGCTTCTGTGGTA
LOC_Os01g11520
Os.7731.1.S1_at--803--31Chr01:6195984..6196008 (25 bp)
ATTGTTACGAGTTTTGTTCCATTGA
LOC_Os01g11520
Target Sequence 
ACTGCGCCGTGTGTCTGTCGGAGCTCGCCGACGGCGAGAAGGTGCGGGAGCTGCCCAACTGCCGGCACGTCTTCCACGTG
GAGTGCGTCGACGCGTGGCTGCGCTCCAGGACCACGTGCCCGCTCTGCCGGGCCGAGGCGGAAGTACCCAAGGCGAGGGC
TTCGGCGGCGGCGACGGCGACGGCGCAGTCGTCGTCGTCGCTCGGTGACGGNAGGAATTNACCGTGGTCGTNGACCATNA
CACNGGCGGCTCTNGACNGAAGCCGGTNGGCANGGTCAACGGCGTTGACTGGTNCAACCGGGATCCTCGAACTCNTCCTA
GCTGCGAGGCTGCAAGGAATTGAGGATCGACGATGACGACGAACTTCAGAGTTGTGATGTGATTCTTTATTTTGCTATAG
GAGCTCTATCAAGTGTAGATTGTGAAACGCATTTGTGATGTGATTCTTTATTTCTTTCCCATATATAGCTAAGAAACAAC
TGCATAATACATTCCCCGCAAAAGAAAAAAAAGCAAAAGTAAAGTGCTTCTGTGGTAATTGTTACGAGTTTTGTTCCATT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis