Browse Element(s) Details


Os.7799.1.S1_at

Description gb:AU102085
DB_XREF= gi:9886192
DB_XREF=AU102085
CLONE=C10205
TID=Os.7799.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ataxin 3-like protein (P0529H11.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6325011/11Machado-Joseph disease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7799.1.S1_at--206--6811Chr01:36984117..36984141 (25 bp)
GTTTTACCTATCAGCTTTCATCGAC
LOC_Os01g63250
Os.7799.1.S1_at--858--152Chr12:23629110..23629379 (25 bp)
ATTTTCCTAAGGAGTGTCCCATGGC
NONE
Os.7799.1.S1_at--185--7251Chr01:36984034..36984058 (25 bp)
GTCCCATGGCAACGGAAGGCTCTAA
LOC_Os01g63250
Os.7799.1.S1_at--117--2951Chr01:36984019..36984043 (25 bp)
AAGGCTCTAATGGTTTCGGGCAGTG
LOC_Os01g63250
Os.7799.1.S1_at--565--8951Chr01:36983992..36984016 (25 bp)
TGACTCCTGATGATGCCCGGAGGAT
LOC_Os01g63250
Os.7799.1.S1_at--313--791Chr01:36983972..36983996 (25 bp)
AGGATAACCTCCTCTTGTAACCAGG
LOC_Os01g63250
Os.7799.1.S1_at--1031--2391Chr01:36983944..36983968 (25 bp)
AAACACCTACTCAGCAGGCAGGCGT
LOC_Os01g63250
Os.7799.1.S1_at--272--911Chr01:36983925..36983949 (25 bp)
AGGCGTCTCTCTAGTTGCTGATCAA
LOC_Os01g63250
Os.7799.1.S1_at--593--291Chr01:36983834..36983858 (25 bp)
ATAGCTGCTAGCCTGATGGACACTG
LOC_Os01g63250
Os.7799.1.S1_at--990--5011Chr01:36983773..36983797 (25 bp)
GCAGGTCTCAGGATGCTTTTGCAAT
LOC_Os01g63250
Os.7799.1.S1_at--918--1511Chr01:36983629..36983653 (25 bp)
AGCAGAACACTACCTCTTTAGAGGG
LOC_Os01g63250
Target Sequence 
GTTTTACCTATCAGCTTTCATCGACACCCTGAAGGGGTCAGGCTGGAGTATCTTTGCAGTGAGGGGCAATTTTCCTAAGG
AGTGTCCCATGGCAACGGAAGGCTCTAATGGTTTCGGGCAGTGGCTGACTCCTGATGATGCCCGGAGGATAACCTCCTCT
TGTAACCAGGTCCAAACACCTACTCAGCAGGCAGGCGTCTCTCTAGTTGCTGATCAATCAGAGGAAATGAGTGAAATGGA
TATGATTGCTGCACAGCAGGAAGAAGCTGACTTAAATGCTGCTATAGCTGCTAGCCTGATGGACACTGGGGGTCCATTTG
CTAATTATGCAGCTCACGAAGAAAGCAGGTCTCAGGATGCTTTTGCAATTGAATCAACATCAGGTGAAATGAGCAAAGAC
GGCAATCTGGAGGAGCAAGGGGCTAACAAGTCTGAAACAAGCGAGCCTAACAGCGATAATATTGAGTCTGCTTCAGGCNG
TAACCCGAAGCAGAACACTACCTCTTTAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis