Browse Element(s) Details


Os.7891.1.S1_a_at

Description gb:AK061351.1
DB_XREF= gi:32971369
TID=Os.7891.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F11, full insert sequence.
FL= gb:AK061351.1 gb:AK104678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4507011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7891.1.S1_a_at--785--1111Chr04:26445862..26445886 (25 bp)
AGTGTTCATCAGTGGTTGCTTTGCT
LOC_Os04g45070
Os.7891.1.S1_a_at--315--9611Chr04:26445857..26445881 (25 bp)
TCATCAGTGGTTGCTTTGCTTCTTT
LOC_Os04g45070
Os.7891.1.S1_a_at--61--1811Chr04:26445831..26445855 (25 bp)
ACCCTCCCAAGTGCGTAGTGTGTTT
LOC_Os04g45070
Os.7891.1.S1_a_at--904--3211Chr04:26445799..26445823 (25 bp)
CAAGAAAGGTCGTGCCTGGTGTGTA
LOC_Os04g45070
Os.7891.1.S1_a_at--1088--9371Chr04:26445790..26445814 (25 bp)
TCGTGCCTGGTGTGTAAAGTCTGGT
LOC_Os04g45070
Os.7891.1.S1_a_at--304--1151Chr04:26445773..26445797 (25 bp)
AGTCTGGTGTTGCTGTATATAACAT
LOC_Os04g45070
Os.7891.1.S1_a_at--375--10211Chr04:26445749..26445773 (25 bp)
TATTACTCCCAAGACAGATATGTTT
LOC_Os04g45070
Os.7891.1.S1_a_at--824--3431Chr04:26445735..26445759 (25 bp)
CAGATATGTTTGGTGCTGTACATGT
LOC_Os04g45070
Os.7891.1.S1_a_at--424--7311Chr04:26445723..26445747 (25 bp)
GTGCTGTACATGTTTGATGCTTGAC
LOC_Os04g45070
Os.7891.1.S1_a_at--874--631Chr04:26445707..26445731 (25 bp)
ATGCTTGACAGGCAACATTCTTATG
LOC_Os04g45070
Os.7891.1.S1_a_at--890--8751Chr04:26445682..26445706 (25 bp)
TGTAGTTAAGAAGCCACATTGTTAT
LOC_Os04g45070
Target Sequence 
AGTGTTCATCAGTGGTTGCTTTGCTTCTTTCACCCTCCCAAGTGCGTAGTGTGTTTGTTGGTGCAAGAAAGGTCGTGCCT
GGTGTGTAAAGTCTGGTGTTGCTGTATATAACATATTACTCCCAAGACAGATATGTTTGGTGCTGTACATGTTTGATGCT
TGACAGGCAACATTCTTATGTGTAGTTAAGAAGCCACATTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7891.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis