Browse Element(s) Details


Os.7903.1.S1_at

Description gb:U92540.1
DB_XREF= gi:1930069
TID=Os.7903.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7903 (NCBI UniGene Cluster)
DEF=Oryza sativa proteasome alpha subunit mRNA, complete cds.
PROD=proteasome alpha subunit
FL= gb:AK098875.1 gb:AK061808.1 gb:U92540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4354010/11Proteasome subunit alpha type 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g43530OsAffx.17499.1.S1_at11/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43530Os.50043.1.A1_at1/118+27397415..27399517F-box protein interaction domain containing protein
LOC_Os08g43540Os.7903.1.S1_at10/118+27400407..27404085Proteasome subunit alpha type 7, putative, expressed
LOC_Os08g43550Os.9336.1.S1_at10/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43550Os.57514.1.S1_x_at1/118+27415128..27416318Myb-related protein Zm38, putative, expressed
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7903.1.S1_at--33--1391Chr08:27401241..27401265 (25 bp)
AGACCATCAAGCTTGCCATCCGAGC
LOC_Os08g43540
Os.7903.1.S1_at--252--5871Chr03:36121477..36121499 (22 bp)
GAGCCCTCCTTGAGGTTGTCGAGAG
NONE
Os.7903.1.S1_at--912--7391Chr08:27403597..27403621 (25 bp)
GTGATGACACACAAGGATGGCCTCC
LOC_Os08g43540
Os.7903.1.S1_at--1104--5611Chr08:27403602..27403626 (25 bp)
GACACACAAGGATGGCCTCCGCGAG
LOC_Os08g43540
Os.7903.1.S1_at--19--1191Chr08:27403649..27403673 (25 bp)
AGTACGTGGCTGAGATTGAAGCAGA
LOC_Os08g43540
Os.7903.1.S1_at--627--4511Chr08:27403703..27403727 (25 bp)
GCGCCCCGAAAGAAACCTGACCTGA
LOC_Os08g43540
Os.7903.1.S1_at--186--6571Chr08:27403735..27403759 (25 bp)
GATTCAGCAAAGCATAATCTCTCTT
LOC_Os08g43540
Os.7903.1.S1_at--911--3052Chr08:27403750..27403774 (25 bp)
AATCTCTCTTAGCATGTGTTGTTTC
LOC_Os08g43540
Os.7903.1.S1_at--738--9471Chr08:27403778..27403802 (25 bp)
TCTGTTCTTGTTTGAGAGGAACGCA
LOC_Os08g43540
Os.7903.1.S1_at--1039--6171Chr08:27403793..27403817 (25 bp)
GAGGAACGCAGAACTGTTTGGTTCA
LOC_Os08g43540
Os.7903.1.S1_at--976--2511Chr08:27403804..27403828 (25 bp)
AACTGTTTGGTTCAACTGAAGTGGA
LOC_Os08g43540
Target Sequence 
AGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACA
CACAAGGATGGCCTCCGCGAGCTGGAGGAGGCTGAGATCGACGAGTACGTGGCTGAGATTGAAGCAGAGAAGGCTGCCGC
CGAGGCCGCGAAGAAGGGCGCCCCGAAAGAAACCTGACCTGATNATCATGATTCAGCAAAGCATAATCTCTCTTAGCATG
TGTTGTTTCTTTTCTGTTCTTGTTTGAGAGGAACGCAGAACTGTTTGGTTCAACTGAAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis